Gene Vapar_1187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1187 
Symbol 
ID7973356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1297773 
End bp1298204 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content60% 
IMG OID644791783 
Productlarge conductance mechanosensitive channel protein 
Protein accessionYP_002943104 
Protein GI239814194 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1970] Large-conductance mechanosensitive channel 
TIGRFAM ID[TIGR00220] large conductance mechanosensitive channel protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATCC TCAGTGAGTT CAAGGAATTT GCCGTCAAGG GCAACGTGAT CGATCTCGCA 
GTCGGCGTGA TCATTGGCGC AGCATTCGGG AAGATCGTCG ATTCGATCGT TGCCGACATC 
ATCATGCCGG TCGTCGGGCT GGTGTTCGGC AAGCTGGATT TCTCTAACCT GTACGTGGTG 
CTGGGCACCG TGCCGGCGGG GGTCGCCAAC AACCTGGCCG ACCTCAAGAA GGCCGGCGTG 
CCGGTGCTGG CCTATGGCAA CTTCATCACC ATCGCGGTCA ACTTCGTGAT CCTTGCCTTC 
ATCATCTTCA TGATGGTCAA GCAGATCAAC AAGCTGCGCA AGACGCATGC CGAGGCGCCC 
GCGGCACCGG TGGCACCGCC GGAGGACATC GCCCTCCTGC GCGAAATCCG CGACAGCCTG 
AAGCGCCCCT GA
 
Protein sequence
MSILSEFKEF AVKGNVIDLA VGVIIGAAFG KIVDSIVADI IMPVVGLVFG KLDFSNLYVV 
LGTVPAGVAN NLADLKKAGV PVLAYGNFIT IAVNFVILAF IIFMMVKQIN KLRKTHAEAP 
AAPVAPPEDI ALLREIRDSL KRP