| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1152 |
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| Symbol | |
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| ID | 7973321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1264943 |
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| End bp | 1269697 |
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| Gene Length | 4755 bp |
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| Protein Length | 1584 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791748 |
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| Product | Glutamate synthase (ferredoxin) |
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| Protein accession | YP_002943069 |
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| Protein GI | 239814159 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0069] Glutamate synthase domain 2 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.801511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACGG CTGCCGAGAT CGAACATCTC CAACAACACG GTCTGTATTC CGGTGCCGAC
GAGCACGATG CCTGCGGCGT CGGCTTCGTC GCGCACATCA AGGGCGAAAA GAGCCATGCC
ATCGTGCTGC AGGGCCTGAA GATCCTCGAG AACCTCGACC ATCGCGGCGC AGTGGGCGCT
GACAAGCTGA TGGGCGATGG CGCCGGCATC CTGATCCAGC TGCCCGACCG CCTCTACCGC
GAAGAAATGG CCAAGCAGGG CGTGGCGCTG CCCCCGCCGG GCGAATACGG TGTCGGCATG
ATCTTCCTGC CCAAGGAACA TGCCTCGCGC GAAGCCTGCG AGCAGGAAAT GGAACGCGCC
ATCAAGGCCG AAGGCCAGGT GCTGCTGGGC TGGCGCGACG TGCCGGTGAA CCGCGACATG
CCGATGTCGC CCACCGTGCG CGCCAAGGAA CCGCTGCTGC GCCAGGTGTT CATCGGCCGC
GGCAACGACG TGATCGTGCA GGACGCGCTG GAACGCAAGC TCTACGTGAT CCGCAAGACC
GCCAGCGCCA ACATCCAGCG CCTGAAGCTC AAGCACAGCA AGGAATACTA CGTTCCCAGC
ATGTCGAGCC GCACCGTGGT CTACAAGGGC CTGCTGCTCG CCGACCAGGT CGGCACCTAC
TACCTAGACC TGCAGGACAA GCGCTGCGTC TCGGCCCTGG GCCTGGTGCA CCAGCGCTTC
TCGACCAACA CCTTCCCCGA GTGGCCGCTG GCCCACCCGT ACCGCTACGT CGCCCACAAC
GGCGAAATCA ACACGGTCAA GGGCAACTAC AACTGGATGA AGGCGCGCGA AGGCGTCATG
TCCTCGCCCG TGCTGGGCGC CGACCTGCAG AAGCTCTACC CCATCAGCTT TGCCGGCCAG
TCCGACACCG CCACCTTCGA CAACTGCCTC GAGCTCTTGA CGATGGCCGG CTACCCCATC
AGCCAGGCCG TGATGATGAT GATTCCCGAG CCCTGGGAGC AGCACGCCAC CATGGACCCG
CGCCGCCGCG CGTTCTACGA ATACCACGCC GCGATGCTGG AGCCGTGGGA CGGCCCGGCC
TCCATCGTGT TCACCGACGG CCGCCAGATC GGCGCCACGC TCGACCGCAA CGGCCTGCGG
CCTTCCCGCT ACTGCGTGAC CGACGACGAC CTGGTCATCA TGGCCTCCGA ATCGGGCGTG
CTGCCCGTGC CCGAGCAGAA AATCGTGCGC AAGTGGCGCC TGCAGCCCGG CAAGATGTTC
CTGATCGACC TGGAGCAGGG CCGCATGATC GACGACGAGG AGGTCAAGGC CACCCTCGCC
AACAGCAAGC CCTACAAGCA GTGGATCGAG AACCTGCGCA TCAAGCTGGA CAGCGTCGAG
GCCGAGCCGG TGCCCGCGCC GCTCTCGCAG GTCGCGCTGC TCGACCGCCA GCAGGCCTTT
GGCTACACCC AGGAGGACAT CAAGTTCCTG ATGAGCCCGA TGGCGCAGGC CGGCGAAGAA
GGCATCGGCT CCATGGGCAA CGACAGCCCG CTGGCCGTGC TCTCCAGCAA GAACAAGCCG
CTGTACAACT ACTTCAAGCA GCTGTTCGCG CAAGTGACCA ATCCGCCGAT CGACCCGATC
CGCGAAGCGA TCGTGATGTC GCTGGTGTCC TTCATCGGCC CCAAGCCCAA CCTGCTGGAC
ATCAACCAGG TCAACCCGCC GATGCGGCTC GAGGTGAGCC AGCCGATCCT CGACTTCGCC
GACATGGCCA AGCTGCGCGA CATCGGCACC TACACGCAGG GCAAGTTCAA GAGCTACGTG
CTCGACATCA CCTACCCGCT CGCCTGGGGC TACGAGGGCG TCGAAGCCAA GCTCGCATCG
CTGTGCGCCG AAGCGGTGGA CGCCATCAAA GGCGGCCACA ACATCCTGAT CGTGAGCGAC
CGCGGCGTGA GCCCGACGCA GGTGGCGATC CCCGCCGTGC TGGCGCTGTC GGCCGTGCAC
CAGTACCTGG TGCGCGAGGG CTTGCGCACC ACGGCCGGCC TGGTGGTGGA AACCGGCTCG
GCGCGTGAAG TGCATCACTT CGGCGTGCTG GCGGGCTACG GCGCCGAAGC CGTGCACCCC
TACCTCGCGA TGGAAACGCT GGCCGCGATG CACGCCGACC TGCCGGGCGA CATGAGCGCG
GAAAAAGCGG TCTACAACTA CGTCAAGGCG ATCGGCAAGG GCCTGTCCAA GATCATGTCG
AAGATGGGTG TCAGCACCTA CATGAGCTAC TGCGGCGCGC AGCTGTTCGA AGCCATCGGC
CTGAACACCG AGACGGTCAA CAAATACTTC ACCGGCACCG CCAGCCGCGT CGAGGGCATC
GGCGTGTTCG AGATTGCCGA GGAAGCCATC CGCATGCACA AGGCCGCGTT CGGCGACGAC
CCGGTGCTCT CCAACATGCT CGACGCCGGC GGCGAATACG CCTGGCGCAC GCGCGGCGAA
GAGCACATGT GGACGCCCGA CGCCATCGCC AAGCTGCAGC ACAGCACGCG CGCCAACAAC
TGGAACACCT ACAAGGAATA CGCGCAGCTC ATCAACGACC AGAACCGCCG CCATCTCACG
CTGCGCGGCC TGTTCGAGTT CAAGCTGGAT CCGGCCAAGG CCATTCCGGT GGACGAGGTC
GAACCTGCCA GCGAGATCGT CAAGCGCTTT GCCACGGGCG CAATGTCGCT CGGCTCGATC
AGCACCGAGG CGCACTCCAC GCTCGCCATT GCCATGAACC GCATCGGCGG CAAGAGCAAC
ACGGGCGAGG GCGGCGAAGA CCCGGCGCGC TACCGCAACG AGCTCAAGGG CATCCCGATC
AAGCAGGGCG ACACGCTCAA GAGCGTGATC GGCGCGGCCA ACGTCGAGGT CGACCTGCCC
CTGAAGGACG GCGACTCGCT GCGTTCGCGC ATCAAGCAGG TGGCGTCGGG GCGCTTCGGC
GTCACGGCCG AGTACCTGCA TTCGGCCGAC CAGATCCAGA TCAAGATGGC GCAGGGCGCC
AAGCCGGGCG AGGGCGGCCA GCTGCCGGGC GGCAAGGTCA CCGAGTACAT CGGCAAGCAG
CGCTACGCGG TGCCGGGCGT GGGCCTGATC TCGCCGCCGC CGCACCACGA CATCTATTCG
ATCGAAGACC TCGCGCAGCT GATCCACGAC CTGAAGAACG CCGCGCCGCA CGCGAGCATC
AGCGTCAAGC TGGTGAGCGA GATCGGCGTG GGCACCATCG CGGCCGGCGT GGCCAAGTGC
AAGAGCGACC ACGTGGTGAT CGCGGGCCAT GACGGCGGCA CGGGCGCGTC GCCCTGGTCG
TCGATCAAGC ACGCGGGCAG CCCGTGGGAA ATCGGCCTCG CAGAAACCCA GCAGACGCTG
GTGCTCAACC GCCTGCGCAG CCGCATCCGC GTGCAGGCCG ACGGCCAGAT GAAGACCGGC
CGCGACGTCG CCATCGGCGC GCTGCTGGGT GCCGACGAGT TCGGCTTTGC CACGGCCCCG
CTGGTGGTCG AGGGCTGCAT CATGATGCGC AAGTGCCACC TGAACACCTG CCCGGTGGGC
GTGGCCACGC AAGACCCGAT CCTGCGCAAG AAGTTCTCGG GCAAGCCCGA GCACGTCGTC
AACTACTTCT TCTTCGTGGC CGAGGAAGTG CGCCAGATCA TGGCCCAGCT GGGCATCCGC
AAGTTCGACG ACCTGATCGG CCGCGCCGAC CTGCTCGACA TGCGCAAGGG CATCGAGCAC
TGGAAGGCTT CGGGCCTGGA CTTCAGCCGC CTGTTCGCGC TGCCGATTGT GCCGGCCGAG
GTGCCGCGCT TCCACGTCGA GAACCAGGAC CACGGCCTGG AGCGTGCGCT CGACGTCAAG
CTCATCGAGA AGTCGCGCCC GGCCATCGAG CGCGGCGAGA AGGTGCAGTT CATCGAGGTG
GCGCGCAACG TCAACCGCTC GGTGGGCGCC ATGCTGTCGG GCGCGCTGAC CAAGGTGCAT
CCGCAGGGCC TGCCCGACGA CTCGATCCGC ATCCAGCTCG AAGGCACGGG CGGCCAGTCG
TTCGGCGCGT TCCTCGCGCG CGGCATCACG CTCTACCTGA TCGGCGATGC CAACGACTAC
ACCGGCAAGG GCTTGTCGGG CGGCCGCGTG GTGGTGCGCC CGAGCCTCGA CTTCCGCGGC
GAAGCCGTGC GCAACACCAT CGTGGGCAAC ACCGCGCTCT ACGGCGCGAC CACCGGCGAA
GCCTACCTCT GCGGCGTGGC CGGCGAGCGT TTTGCCGTGC GCCTCTCGGG TGCCACGGCG
GTGGTCGAAG GCACGGGCGA CCATGGCTGC GAATACATGA CGGGCGGTAC GGTCGCGGTG
CTCGGCAAGA CGGGCCGCAA CTTTGCGGCC GGCATGAGCG GTGGCGTGGC CTTCGTCTAC
GACGAGGACG GCCAGTTCGC CACGCGCTGC AATCTCTCGA TGGTGTCGCT CGACAAGGTG
CTGACCTCGG CCGAGCAGAC GGCGAGCATG CACCGCAAGG TCTGGCACGG CGGCGAGACC
GACGAGGCCC AGCTCAAGAA GCTGCTCGAA GAGCACCACC GCTGGACCGG CAGCAAGCGC
GCCCGCGAAC TGCTCGACAA CTGGGCCGTG TCGCGCACCA AGTTCGTCAA GGTGTTCCCG
AACGAGTACA AGCGTGCGCT GGCCGAGCTG CACGACCGCA AGGTCGAGCT CACGAGCAGC
GGCAACAACG CGCACATGGG CCTGGAGCCG CATGCACTGG CCGCTGCGCC GCATTCGGCT
CCGGCCGCAG TTTGA
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| Protein sequence | MTTAAEIEHL QQHGLYSGAD EHDACGVGFV AHIKGEKSHA IVLQGLKILE NLDHRGAVGA
DKLMGDGAGI LIQLPDRLYR EEMAKQGVAL PPPGEYGVGM IFLPKEHASR EACEQEMERA
IKAEGQVLLG WRDVPVNRDM PMSPTVRAKE PLLRQVFIGR GNDVIVQDAL ERKLYVIRKT
ASANIQRLKL KHSKEYYVPS MSSRTVVYKG LLLADQVGTY YLDLQDKRCV SALGLVHQRF
STNTFPEWPL AHPYRYVAHN GEINTVKGNY NWMKAREGVM SSPVLGADLQ KLYPISFAGQ
SDTATFDNCL ELLTMAGYPI SQAVMMMIPE PWEQHATMDP RRRAFYEYHA AMLEPWDGPA
SIVFTDGRQI GATLDRNGLR PSRYCVTDDD LVIMASESGV LPVPEQKIVR KWRLQPGKMF
LIDLEQGRMI DDEEVKATLA NSKPYKQWIE NLRIKLDSVE AEPVPAPLSQ VALLDRQQAF
GYTQEDIKFL MSPMAQAGEE GIGSMGNDSP LAVLSSKNKP LYNYFKQLFA QVTNPPIDPI
REAIVMSLVS FIGPKPNLLD INQVNPPMRL EVSQPILDFA DMAKLRDIGT YTQGKFKSYV
LDITYPLAWG YEGVEAKLAS LCAEAVDAIK GGHNILIVSD RGVSPTQVAI PAVLALSAVH
QYLVREGLRT TAGLVVETGS AREVHHFGVL AGYGAEAVHP YLAMETLAAM HADLPGDMSA
EKAVYNYVKA IGKGLSKIMS KMGVSTYMSY CGAQLFEAIG LNTETVNKYF TGTASRVEGI
GVFEIAEEAI RMHKAAFGDD PVLSNMLDAG GEYAWRTRGE EHMWTPDAIA KLQHSTRANN
WNTYKEYAQL INDQNRRHLT LRGLFEFKLD PAKAIPVDEV EPASEIVKRF ATGAMSLGSI
STEAHSTLAI AMNRIGGKSN TGEGGEDPAR YRNELKGIPI KQGDTLKSVI GAANVEVDLP
LKDGDSLRSR IKQVASGRFG VTAEYLHSAD QIQIKMAQGA KPGEGGQLPG GKVTEYIGKQ
RYAVPGVGLI SPPPHHDIYS IEDLAQLIHD LKNAAPHASI SVKLVSEIGV GTIAAGVAKC
KSDHVVIAGH DGGTGASPWS SIKHAGSPWE IGLAETQQTL VLNRLRSRIR VQADGQMKTG
RDVAIGALLG ADEFGFATAP LVVEGCIMMR KCHLNTCPVG VATQDPILRK KFSGKPEHVV
NYFFFVAEEV RQIMAQLGIR KFDDLIGRAD LLDMRKGIEH WKASGLDFSR LFALPIVPAE
VPRFHVENQD HGLERALDVK LIEKSRPAIE RGEKVQFIEV ARNVNRSVGA MLSGALTKVH
PQGLPDDSIR IQLEGTGGQS FGAFLARGIT LYLIGDANDY TGKGLSGGRV VVRPSLDFRG
EAVRNTIVGN TALYGATTGE AYLCGVAGER FAVRLSGATA VVEGTGDHGC EYMTGGTVAV
LGKTGRNFAA GMSGGVAFVY DEDGQFATRC NLSMVSLDKV LTSAEQTASM HRKVWHGGET
DEAQLKKLLE EHHRWTGSKR ARELLDNWAV SRTKFVKVFP NEYKRALAEL HDRKVELTSS
GNNAHMGLEP HALAAAPHSA PAAV
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