| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1151 |
|---|
| Symbol | |
|---|
| ID | 7973320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1264064 |
|---|
| End bp | 1264759 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791747 |
|---|
| Product | protein of unknown function DUF1568 |
|---|
| Protein accession | YP_002943068 |
|---|
| Protein GI | 239814158 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1943] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGTC TGCCTCGCCT CACGCTTCCC GGCCTGCCGC ACCACGTGAT CCAGCGCGGC
AACAACCGCC AGGCCATCTT CATCGACCGC GCCGACCACG AGCGGCTGCT CGGCCTGATG
GCGGACGCGG CCCCGCGCTT CGGCGTGGCG CTGCATGCCT ACGTGCTGAT GGACAACCAC
TTCCATCTGC TGGCCACGCC CGACACGACC ACCGGGCTGC CGCAGTTCAT GCAGGCGGTG
GGGCGCAGCT ACGTGCGCTA TTTCAACGAC CGCCACGGCC GCAGCGGCAC CCTGTGGGAA
GGGCGCTACA GGTCGACGCT GATCCAGACC GACCGCTATT TGCTGACCTG CATGGCGTAC
ATCGACCTGA ATCCCGTGCG GGCCGGCATG GTGTCGGACG CGCGCGACTT TCCATGGTCC
AGCCACGGGC ACTACGCGGG CCTGCGGCAC GACAGGCTGC TGACGCCGCA TCCCCTGTAT
TGGGAGCTGG GCAACACGCC CTTCGCCCGC GAGGCGGCGT ACGTCGAACT GGTGCGCGGC
GGCGTGCGCG CAGCCGACCA GGGCACGCTG ACCGAGGCCA CCTTGCGGGG TTGGGCGGCC
GGCGATGCCG ATTTTTTGGC GTCGCTTCAG AAAGCGACCG AACGCCGCGT CGCCAAAGCC
AAGGCCGGGC GCCCGCCGGC GGCTTCCGAT TCCTGA
|
|---|
| Protein sequence | MARLPRLTLP GLPHHVIQRG NNRQAIFIDR ADHERLLGLM ADAAPRFGVA LHAYVLMDNH
FHLLATPDTT TGLPQFMQAV GRSYVRYFND RHGRSGTLWE GRYRSTLIQT DRYLLTCMAY
IDLNPVRAGM VSDARDFPWS SHGHYAGLRH DRLLTPHPLY WELGNTPFAR EAAYVELVRG
GVRAADQGTL TEATLRGWAA GDADFLASLQ KATERRVAKA KAGRPPAASD S
|
|---|
| |