| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1144 |
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| Symbol | |
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| ID | 7973313 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1256232 |
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| End bp | 1258376 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791740 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_002943061 |
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| Protein GI | 239814151 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCATA AAAAATCAAC GATGGCACAG CGGCTGCGAG CTGCGGGGCT GGGTCTGCTG
GCACTTGGCG CTTTCGCTTT GGCCCATGCG CAAAACGCCA TCGAGGCGGT GACCAGTTCG
ACGCAGTCCG GCGCGGAAGT GATCCGCATC GACCTTGCCC AGCCGCTCGC GGCCTTGCCG
ACCGGCTTTG TCGTGCAGAC GCCGGCGCGC ATCGCGCTCG ATTTTCCGGG CGTCACCAAC
GCCATCGGCC GCTCTGCCAT TGAGGTGAAC CAGGGCAACC TGCGTTCCGT CAATGTGGTC
CAGGCCGGCG AGCGCAGCCG GGTGGTGCTG AACCTCAAGC AGGCAACCGC ATACAAGACC
GAGATCCAGG GCAAGTCGCT GCTGGTGATT CTCGAACCCG CGGCCGGCGC CGCGCTGGCG
TCGTCCACGC CCACCGTCTT TGCCGAGAAC CGCAACCGCG ACACGCTGCC GCTGCGCGAC
GTCGACTTCC GCCTGGGTGC GGACAACACC GGCCGCGTGA TCGTCGACCT GCCGAACAAC
CAGGTGGGCG TCGATGTCAA GCAGCAGGGC AAGAGCCTCG TGGTGGAGTT CACCAAGTCG
ACGCTGCCCG AGGGCTTGCG CCGCCGCCTC GACGTGGCCG ACTTCAACAC GCCGGTCCAG
CTGATCACCT CGCAACAGTC GGGCGACCGC GTGCGCATGA CGATCGAGGC CAAGGGCGAC
TGGGAGCACA GCGCCTACCA GAGCGAGAAC CAGTTCGTGG TGGAGGTCCG CGCCCGCAAG
GTGGACCCGG CCAAGCTGAC GCAGGGCGTG GGCTACAACG GCGAGAAGCT GTCGCTGAAC
TTCCAGAACA TCGAGATCCG CTCGCTGCTG CAGGTGATTG CCGACTTCAC CAACTTCAAC
ATCGTGACCT CCGACTCGGT CACCGGCGCG CTGACGCTGC GGCTGAAGGA CGTGCCCTGG
GACCAGGCCC TGGACATCAT CATGCAGGCC AAGAACCTGG GCATGCGCAA GAACGGCAGC
GTGCTGTGGA TCGCGCCCAA GGACGAGATC AACGCCAAGG AAAAGCTCGA ATTCGAAGCC
AAGGCCGCAA TCGAGAACCT GGAGCCGCTG CGCACCCAGT CGTTCCAGCT CAACTACACC
AAGGCCATTG CCATTGCGCA GGGCCTGACC GGCACCGGCG CCTCGGCCGG CGGCGGTGGC
GGCTCCGGCA CCACCACGCG CATCCTGAGC CCGCGCGGCA GCGTGATCGC GGAGTCGCGC
ACCAACCAGC TGTTCGTGTC GGACATTCCC TCGCGCCTGG CGCAAGTGGC CGACCTGATC
CAGAAGCTCG ACATCCCGGT TCGGCAGGTG CTGATCGAAG CGCGCATCGT GGAAGCCTCC
GACACCTTCG GCAAGTCGCT GGGCGTGCGG CTGGGCGGCG GTATCTCCCG CGAACGCGTC
GCGTCGGCCA ACGGCAATCC GGCATACGGC ACCTTCGGCG TCATGCCTGT CACCACCGCC
GCCGGCGGCG TGGGCGGCGC AACAGCCACC TGGACCAACT CCAACTTCAT CAACCTGCCC
GCAGGCGATG CCGGCGGCAC CGGCAATGCG CCCGGCACCT TCGCGATCTC GCTGTTCAAC
TCGAGCTTGT CGCGCATGCT GAACCTCGAG ATCTCGGCGC TCGAGGCCGA CGGCAAGGGC
AAGCTGGTGT CCAGCCCGCG CGTCATCACG GCCGACCAGA CCAAGGCGCT GATCGAGCAG
GGCGAGGAAA TTCCCTACCA GCAGGCCACG TCCAGCGGCG CCACCTCCAT CTCGTTCCGC
AAGGCGGTGC TGAAGCTCGA GGTCACGCCG CAGATCACAC CCGAAGGCAA CATCATCCTC
ACGCTCGACG TGAGCAAGGA TGCCCGCGGC GTCAACACCT CGGCCGGCCC GGCCATCAAC
ACCAAGCATG TGCAGACCGA GGTGCTGGTC GAGAACGGCG GCACGGTCGT CATCGGTGGT
ATCTTCGAAC TCACCGAAAC CAATGACGAA TCGCGCGTGC CGGTGCTGGG TGAAGTGCCC
TACCTGGGTG CACTGTTCCG CAAGCGCGAA CGCGTTGCCA ACAAGACCGA AATGCTCGTC
TTTATCACTC CGAAGATGAT TACCGACCGC AACGCCGCGC GCTGA
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| Protein sequence | MNHKKSTMAQ RLRAAGLGLL ALGAFALAHA QNAIEAVTSS TQSGAEVIRI DLAQPLAALP
TGFVVQTPAR IALDFPGVTN AIGRSAIEVN QGNLRSVNVV QAGERSRVVL NLKQATAYKT
EIQGKSLLVI LEPAAGAALA SSTPTVFAEN RNRDTLPLRD VDFRLGADNT GRVIVDLPNN
QVGVDVKQQG KSLVVEFTKS TLPEGLRRRL DVADFNTPVQ LITSQQSGDR VRMTIEAKGD
WEHSAYQSEN QFVVEVRARK VDPAKLTQGV GYNGEKLSLN FQNIEIRSLL QVIADFTNFN
IVTSDSVTGA LTLRLKDVPW DQALDIIMQA KNLGMRKNGS VLWIAPKDEI NAKEKLEFEA
KAAIENLEPL RTQSFQLNYT KAIAIAQGLT GTGASAGGGG GSGTTTRILS PRGSVIAESR
TNQLFVSDIP SRLAQVADLI QKLDIPVRQV LIEARIVEAS DTFGKSLGVR LGGGISRERV
ASANGNPAYG TFGVMPVTTA AGGVGGATAT WTNSNFINLP AGDAGGTGNA PGTFAISLFN
SSLSRMLNLE ISALEADGKG KLVSSPRVIT ADQTKALIEQ GEEIPYQQAT SSGATSISFR
KAVLKLEVTP QITPEGNIIL TLDVSKDARG VNTSAGPAIN TKHVQTEVLV ENGGTVVIGG
IFELTETNDE SRVPVLGEVP YLGALFRKRE RVANKTEMLV FITPKMITDR NAAR
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