Gene Vapar_1142 details

Gene Information

• Locus tag: Vapar_1142
• ID: 7973311
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1255013
• End bp: 1255696
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644791738
• Product: Pilus assembly protein PilO
• Protein accession: YP_002943059
• Protein GI: 239814149
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGCA ATCGCCCCTC TCAAAAACTG GACGTCGGCG CGGCGCTGCG CGGCTTCGGC 
GACCAGTTCC GCAACCTGAA CCCGAACGAC CCGTCCGCAT GGCCGGCGGT GCCCCGCTAC 
GCCCTGTGCC TGGCGGTCAC GGCCCTGGTG CTGGCCGGCC TGTGGTTCGT GTGGCTGACC 
AACTCCAACG ACGAGCTCGA GAGCGAGCGC GCCAAGGAAG TCACGCTGCG CGCCGACTAC 
CAGAAGAAGG TGGCGCTGGC CGCCAATCTC GACCTGCTGA AGAAGCAGCG CGAGCAGGTG 
CAGCAATACG TGACGCTGCT CGAGAAGCAG CTGCCCAGCA AGGCGGAAAT GGACGCATTG 
CTGTCCGACA TCAACCAGGC CGGGCTCGGG CGCAGCCTGC AGTTCGAACT GTTCCGCCCG 
GGACAGGTTT CGGTGAAGGA CTACTACGCG GAGCTGCCGA TCGCCGTGCG CGTGACCGGC 
CGCTACCACG ACATCGGCTC CTTCGCCGCC GACGTCGCGA GCCTCTCGCG CATCGTGACG 
CTGAACAATC TCACGATCAC CCCGCAGCAA AAAGACAAGG ACGGCACCCT CACGATGGAT 
GCCACGGCAC GCACCTACCG CTATCTCGAT GACGAAGAGC GCGCGGCCCA GAAACGCGCC 
GCGGCGCCGA AGGCGAAGAA ATGA 

 

Protein sequence

MASNRPSQKL DVGAALRGFG DQFRNLNPND PSAWPAVPRY ALCLAVTALV LAGLWFVWLT 
NSNDELESER AKEVTLRADY QKKVALAANL DLLKKQREQV QQYVTLLEKQ LPSKAEMDAL 
LSDINQAGLG RSLQFELFRP GQVSVKDYYA ELPIAVRVTG RYHDIGSFAA DVASLSRIVT 
LNNLTITPQQ KDKDGTLTMD ATARTYRYLD DEERAAQKRA AAPKAKK