Gene Vapar_1141 details

Gene Information

• Locus tag: Vapar_1141
• ID: 7973310
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1254385
• End bp: 1255005
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644791737
• Product: Fimbrial assembly family protein
• Protein accession: YP_002943058
• Protein GI: 239814148
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3166] Tfp pilus assembly protein PilN

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.774309
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATCCTCA TCAACCTGCT TCCGCACCGC GAAGCCGCAC GCAAGCGGCG CCGCGAAGCG 
TTCTACGGCA CCCTGGGTGC GGCCGCCGTG CTGGGCGTGC TGATCGCCGG CCTGGGCTAT 
CTCTGGTTCG AGGCGCAGAT CTCGGCCCAG CAGGCCAAGA ACAATTTCCT CAAGACCGAG 
ATCACCAAGC TCGAAGTCGA AATCAAGGAA ATCTCGACCC TGCAGGAAGA AATTGCCGCG 
CTGCGCGCGC GCCAGCAGGC GGTCGAAGAC CTCCAGGGCG ATCGCAACCT GCCGGTGCAC 
CTGCTCAACG AACTGGTTCG CCAGCTGCCA GACGGCGTCT ACCTGACCAG CATGAAGCAG 
GACAACCAGA CCGTCACGCT GCAGGGCATG GCGCAGTCGA ACGAGCGCGT CTCGGAGCTG 
CTGCGCAACC TGGGCAACAA CAGCCCGTGG CTGGTCAAGC CCGAGCTGGT CGAAATCACT 
TCCGCAACGG TGAGCCTGAG TCAGCGCGAC CAGCGCCGCG TGGCGAACTT CACCATGCGC 
ATCGGCCTCA AGCGGCCGAC CGACGCGCAG AAGGCCGCGG CCGACAAGGC CCTGGCCGCA 
GCGGCGCCAG CCAAGGGGTA G 

 

Protein sequence

MILINLLPHR EAARKRRREA FYGTLGAAAV LGVLIAGLGY LWFEAQISAQ QAKNNFLKTE 
ITKLEVEIKE ISTLQEEIAA LRARQQAVED LQGDRNLPVH LLNELVRQLP DGVYLTSMKQ 
DNQTVTLQGM AQSNERVSEL LRNLGNNSPW LVKPELVEIT SATVSLSQRD QRRVANFTMR 
IGLKRPTDAQ KAAADKALAA AAPAKG