| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1133 |
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| Symbol | |
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| ID | 7969655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1245575 |
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| End bp | 1246891 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791729 |
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| Product | cytochrome c-type biogenesis protein CcsB |
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| Protein accession | YP_002943050 |
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| Protein GI | 239814140 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR03144] cytochrome c-type biogenesis protein CcsB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCA CCACCCTCAC GCTGCACGAA AGCTGGTTTT CGCGGCGCAA CTTTTTCGAC
TGGGTGTTTG CGGCGCTGGT GCTGGCAGGC GGCCTGTTCG CCTTTGCGCG CTATGCGGGC
TCGATGGACG CCTACGAGAA GCCCATCCTC GGCGCCGCGA TGATCTCGGT CGTCGCAATC
GGCTGGTTCT GGCGCCCGCT GCGGGTGCTG GCCATCGTGG TGGCCGCGGC CTCGCTGCTG
GCCATCAGTT CCTACCAGGG CGACCTGGCG CGCGCGGACA CGGTGTTCTG GCTCAAGTAC
TTCCTGTCGA GCCAGTCGGC CATCCTCTGG ATGAGCGTGC TGTTCTTCAT GAGCACGCTG
TTCTACTGGC TCGGTTTCTT CGGCGGCAAG CAGGGCGACA CCTTCGACCT GATCGGCTCG
CGGCTGGCCT GGGCCGCCAT TGCCATGGCG CTCATCGGCA CCATGGTGCG CTGGTACGAG
AGCCATCTGC TCGGGCCGGA CATCGGCCAC ATTCCCGTCA GCAACCTGTA CGAAGTGTTC
GTGCTCTTTT GCTGGCTCAC GACGGCCTTC TATCTCTACT TCGAATCGCG CTACGGCACG
CGCACGCTCG GCGCCTTCGT GATGCTGGTG GTGAGCGCGG CGGTGGGCTT TTTGCTCTGG
TACACGCTGG TGCGCAATGC GCACGAGATA CAGCCGCTGG TGCCCGCGCT GCAGAGCTGG
TGGATGAAGC TGCACGTGCC GGCCAACTTC ATCGGCTATG GCACCTTCTC GCTCGCGGCC
ATGGTGGCCT TCGCCTATCT CATCAAGGAG CAGGCCGAGG AAACGCGCTG GTACAAGCTC
ACGCCGATCT GGCTGCTGGG CGTGGCGCTG TGCTTCGTGC CGGTGGCCTT CCGCCAGCGC
GTGCAGGAGG CCGGCGGCAG CTACTGGGTG ATCTATGCGG GCATCTCCGC ACTGATTGCC
GCGGGCATTC TGCTCGGCCG CCGGCGCATT GCCGCTCGGC TGCCGGCCAA CGAGGTGCTC
GACGACGTGA TGTACAAGTC GATCACGGTC GGCTTTGCCT TCTTCACCAT TGCCACCGTG
CTCGGCGCGC TGTGGGCGGC CGACGCCTGG GGCGGCTACT GGAGCTGGGA CCCGAAGGAA
ACCTGGGCCC TGATCGTCTG GCTCAACTAC GCGGCCTGGC TGCACATGCG GCTGGTCAAG
GGCCTGCGCG GCACCGTGGC TGCGTGGTGG GCGCTGGGCG GCCTCGCGGT GACCACCTTC
GCCTTTCTTG GCGTGAACAT GTTCCTGAGC GGACTGCACA GCTACGGCAC GCTGTAG
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| Protein sequence | MNTTTLTLHE SWFSRRNFFD WVFAALVLAG GLFAFARYAG SMDAYEKPIL GAAMISVVAI
GWFWRPLRVL AIVVAAASLL AISSYQGDLA RADTVFWLKY FLSSQSAILW MSVLFFMSTL
FYWLGFFGGK QGDTFDLIGS RLAWAAIAMA LIGTMVRWYE SHLLGPDIGH IPVSNLYEVF
VLFCWLTTAF YLYFESRYGT RTLGAFVMLV VSAAVGFLLW YTLVRNAHEI QPLVPALQSW
WMKLHVPANF IGYGTFSLAA MVAFAYLIKE QAEETRWYKL TPIWLLGVAL CFVPVAFRQR
VQEAGGSYWV IYAGISALIA AGILLGRRRI AARLPANEVL DDVMYKSITV GFAFFTIATV
LGALWAADAW GGYWSWDPKE TWALIVWLNY AAWLHMRLVK GLRGTVAAWW ALGGLAVTTF
AFLGVNMFLS GLHSYGTL
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