Gene Vapar_1131 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1131 
Symbol 
ID7969653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1242625 
End bp1243293 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content66% 
IMG OID644791727 
Productcytochrome c class I 
Protein accessionYP_002943048 
Protein GI239814138 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTGT TTGCCAATTT TCTGCTTGCA GCCCTCATGG GCGTCGCAGC CAGCGCTAGC 
CTTGCGGCCG ACGAGCACGC CGCCGCGCCA GCTGACGGAC CCGTCGCGGC CAAGCCGGCC 
AAGCCCGATC CCGCCAAGGG CGACGCGGTG TTCAATTCCG CCGCCCAGGC CTGTGCTTCC 
TGCCACAACG CGGACGGCAA CTCGGCCATT GCGGCCAACC CCAAGCTGGC GCAGCAGCAC 
CCCGAATACA TCCTCAAGCA GCTGCAGGAC TTCAAGTCCG GCAAGCGCAA GAGCCCGATC 
ATGCAGCCCA TGGCGGCCAA GCTGTCCGAC GAGGACATGC GCAACATCGC CTGGTTCGTC 
GGCTCCAAGA AGATCAAGAC CGGCTTCTCC AAGGAGAAGG ACCTGGTCGC GCTGGGCGAG 
AAGATCTACC GCGGCGGCAT TGCCGATCGC CAGATCCCGG CCTGCGCCGG CTGCCACAGC 
CCCAACGGCG CCGGCATGCC CGCGCAGTAC CCGCGCCTGG GCGGCCAGCA TGCCGACTAC 
ACGGTGGCAC AGCTTGTTGC TTTCCGGGAC AACGTGCGCC AGAACAGCGC TCCCATGACC 
GGCGTGGCCG CAAAGCTCAA CGACCGCGAA ATCAAGGCTG TTGCAGATTA CATCGCCGGC 
CTGCGCTGA
 
Protein sequence
MKLFANFLLA ALMGVAASAS LAADEHAAAP ADGPVAAKPA KPDPAKGDAV FNSAAQACAS 
CHNADGNSAI AANPKLAQQH PEYILKQLQD FKSGKRKSPI MQPMAAKLSD EDMRNIAWFV 
GSKKIKTGFS KEKDLVALGE KIYRGGIADR QIPACAGCHS PNGAGMPAQY PRLGGQHADY 
TVAQLVAFRD NVRQNSAPMT GVAAKLNDRE IKAVADYIAG LR