| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1126 |
|---|
| Symbol | |
|---|
| ID | 7969648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1237635 |
|---|
| End bp | 1238816 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644791722 |
|---|
| Product | S-adenosylmethionine synthetase |
|---|
| Protein accession | YP_002943043 |
|---|
| Protein GI | 239814133 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0192] S-adenosylmethionine synthetase |
|---|
| TIGRFAM ID | [TIGR01034] S-adenosylmethionine synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACG ACTTCCTCTT CACCTCCGAA TCGGTTTCCG AAGGCCACCC CGACAAGGTC
GCCGACCAGA TCTCGGACGC CATCCTGGAC GCGATCTTCG AGCAGGACCC GCGCAGCCGC
GTGGCCGCCG AGACGCTGAC CAACACCGGC CTGGTGGTGC TCGCGGGCGA AATCACGACC
AACGCGCACG TCGACTACAT CCAGGTGGCG CGCGACACCA TCAAGCGCAT CGGCTACGAC
AACACCGACT ACGGCATCGA CTACAAGGGC TGCGCCGTGA TGGTCTGCTA CGACAAGCAG
TCCAACGACA TCGCCCAGGG CGTGGACCAC GCGAGCGACG ACCACCTGAA CACCGGCGCC
GGCGACCAGG GCCTGATGTT CGGCTACGCC TGCGACGAGA CGCCCGAGCT CATGCCCGCA
CCCATCTACT ACGCGCACCG CCTCGTGGAG CGCCAGGCCC AGTTGCGCAA GGACGGCCGC
CTGCCCTTCC TGCGGCCCGA CGCCAAGAGC CAGGTGACCA TGCGCTATGT CGACGGCAAG
CCCCACAGCA TCGACACCGT GGTGCTCTCC ACGCAGCACC ACCCCGACCA GAGCGAAACG
CCCACCAAGA TGAAGGCCTC GTTCAATGAA GCCATCATCG AGGAGATCAT CAAGCCCGTG
CTGCCGAAGG AATGGCTCAA GGACACGCGC TACCTGATCA ACCCGACCGG GCGCTTCGTC
ATCGGCGGCC CGCAGGGCGA CTGCGGCCTC ACGGGCCGCA AGATCATCGT CGACACCTAC
GGCGGCGCCT GCCCGCACGG CGGCGGCGCG TTCTCGGGCA AGGACCCGTC CAAGGTCGAC
CGCTCGGCCG CCTACGCTGC GCGCTATGTG GCCAAGAACA TCGTGGCCGC CGGCCTCGCG
CGCCAGTGCC AGATCCAGGT GGCCTACGCC ATCGGCGTGG CCCAGCCGAT GAACATCACG
GTCTACACCG AAGGCACCGG CGTGATCCCC GACGCCAAGA TCGCCGAGCT CGTGCGCGAG
TTCTTCGACC TGCGTCCCAA GGGCATCATC CAGATGCTCG ACCTGCTGCG CCCGATCTAC
CAGAAGACCG CCGCCTACGG CCACTTCGGC CGCGAAGAAC CCGAGTTCAC CTGGGAAGCG
ACCACGCAGG CGGCTGCGCT GCGCGCCGCG GCCGGCCTGT AA
|
|---|
| Protein sequence | MANDFLFTSE SVSEGHPDKV ADQISDAILD AIFEQDPRSR VAAETLTNTG LVVLAGEITT
NAHVDYIQVA RDTIKRIGYD NTDYGIDYKG CAVMVCYDKQ SNDIAQGVDH ASDDHLNTGA
GDQGLMFGYA CDETPELMPA PIYYAHRLVE RQAQLRKDGR LPFLRPDAKS QVTMRYVDGK
PHSIDTVVLS TQHHPDQSET PTKMKASFNE AIIEEIIKPV LPKEWLKDTR YLINPTGRFV
IGGPQGDCGL TGRKIIVDTY GGACPHGGGA FSGKDPSKVD RSAAYAARYV AKNIVAAGLA
RQCQIQVAYA IGVAQPMNIT VYTEGTGVIP DAKIAELVRE FFDLRPKGII QMLDLLRPIY
QKTAAYGHFG REEPEFTWEA TTQAAALRAA AGL
|
|---|
| |