| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1125 |
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| Symbol | |
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| ID | 7969647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1235476 |
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| End bp | 1237605 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791721 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002943042 |
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| Protein GI | 239814132 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCTG CACTTTCCGC TGCCGCCACT GCCGCCGTCC GCCTGCTCCT GCTGGGAGCT
CCGCTCGCCG CAGCGGCGCA GCAGGCCGAC CGCGGCAGCC TGCCCGAAGT CACCGTCTCC
ACGCCGCGCG GCGAGGTCGC TCCGTTCAAC GTGCCGGGCT CGGTGGACCG GGTCGACGGC
GCCGAGATGC GCGACAGCCG GCTGCAGGTC AATCTTTCCG AAAGCCTGGG CAGCGTTCCG
GGCCTGCAGG TGCAGAACCG TCTGAACTAC GCGCAGGACC TGCAGCTGTC GATCCGTGGC
TTCGGCGCGC GTTCCACCTT CGGCGTGCGC GGCGTGCGGC TGTATGTCGA CGGCATTCCC
GCGACGCTGC CCGATGGCCA GGGCCAGACT TCCAACATCG ACATCGGCTC GCTCGACCGC
ATCGAGATAT TGCGCGGGCC GTTCTCGGCG CTCTACGGCA ATTCGTCGGG CGGCGTGCTG
CAGGCCTTCA CCGCGTCGGG CGAGGGCGCG CCGCGGCTTT CGTACTCGGC GGCCGGAGGC
AGCTTCGGCA CCTGGCGCCA GTCGCTCCAG GCCAGCGGAT CGCAGGGCGC GGTCGACTAC
CTGCTGAACG CCAGCCGCTT CCGGACCGAC GGCTGGCGCG AACACAGCGC GGCACGGCGC
GACATTGCGA ACGGCAAGCT CGGCATCGCG CTGGACAACG GCGACAAGCT CACGCTGGTG
CTCAACAGCG TGCGCATCAG CGCGCAGGAT CCGCTGGGCC TCACGGCCGA CCAGTACGCG
CTCGCGCCGC GCAGCGCACC GCTCGCCACG CAGTACGACA CCCGCAAGAC GGTGGAGCAG
ACGCAGGCCG GCCTGCTCTA TGAGCGGCGC ATCGATGCCG CGCAGTCGCT GCGGCTCATG
GTCTACGGCG GCGAGCGCAA GACCGTGCAG TACCAGTCGA TTCCGCCGTC GGCGCAGCAG
AACCCGCTGC ATGCGGGCGG CGTGATCGAC CTCAAGCGCC AGTACGGCGG AGCCGACCTG
CGCTGGACCG CCGCGCTGCA ACTGGCCGAC CGGCCGCTCG AACTGGTGGC GGGGCTGGGC
TACGACAGCC TGCGCGAACA GCGCCGCGGC TACGAGAACT ACCTCGGCCG CGTGGCCGCA
CCCGTGCTGG GCGTGCAGGG GCGCCTGCGG CGCAGCGAGC GCAACGAGGT CTGGAACCTC
GACCCCTACG CGCAGGCCAC CTGGCGCCTT GCGGAGCAAT GGACGCTCGA GGCCGGCATG
CGCCGCAGCA GCGTGCACTT CGATTCGCAG GACCGCTACA TCGTGGGCGC CAACCGCGAC
GACAGCGGCA GCGCGCGCTA CAGCAAGACG CTGCCCGTGG CTTCGCTGCG CTACCAGGCC
ACGCCCGATC TTGCGCTGTA CGGCTCGATC GGCCGGGGCT TCGAGACGCC GACGCTCAAC
GAGCTGTCGT ACCGCGCAGG CGGTGCCAGC GGGCTCAACT TCGCGCTGCG GCCCTCAGTC
AACGACAGCG TCGAACTGGG TGCGAAGGCG CGGCTGGGCG GAGGGCTGCT GACGGCGGCG
CTGTTCCAGA CCCGCACCCG CGACGAGATC GTGACCGACA CCAACACCGG CGGCCGCGCC
ACGTTCCAGA ATGCGGGCCG CACGCGGCGC AACGGCTTCG AGCTGGCCTG GCAGCACGAG
ACGGCCAGCC ACTGGCGCAC CCAGCTGGCC TACACCTGGC TCGACGCGCG CTACCGCGAT
GCCTTCTGCT CGCCGTCGCC CTGCGCGGCA TCCAACACGG TGGCGGCGGG CAACCGCATT
CCGGGCATTG CGCGGCAGTC GCTCTTCGCA TCGCTGGGCT GGGTGCCGCC CGAAGGCTGG
CGCGCCGGCG TCGAGATGCG CGCGCTCGGG CGCATGCAGG CCAACGACGC CAACACCGCC
AGCGCGCCGG GTTATGCCGT CGCGGCGCTG TACGCCGGCT ACCTGAAGAA ATGGGAGCGC
TGGGAGTTCA ACGCCTTTGC GCGCGTCGAC AACCTGTTCG ACCGCCGCTA CGTGGGCTCG
CTGATCGTCA ACGAGGGCAA TGCGCGCTAC TACGAGCCCG CGCCGGGCCG CAACTGGACG
GTGGGCCTGA GCGGCGCCTA CCGCTTCTGA
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| Protein sequence | MKPALSAAAT AAVRLLLLGA PLAAAAQQAD RGSLPEVTVS TPRGEVAPFN VPGSVDRVDG
AEMRDSRLQV NLSESLGSVP GLQVQNRLNY AQDLQLSIRG FGARSTFGVR GVRLYVDGIP
ATLPDGQGQT SNIDIGSLDR IEILRGPFSA LYGNSSGGVL QAFTASGEGA PRLSYSAAGG
SFGTWRQSLQ ASGSQGAVDY LLNASRFRTD GWREHSAARR DIANGKLGIA LDNGDKLTLV
LNSVRISAQD PLGLTADQYA LAPRSAPLAT QYDTRKTVEQ TQAGLLYERR IDAAQSLRLM
VYGGERKTVQ YQSIPPSAQQ NPLHAGGVID LKRQYGGADL RWTAALQLAD RPLELVAGLG
YDSLREQRRG YENYLGRVAA PVLGVQGRLR RSERNEVWNL DPYAQATWRL AEQWTLEAGM
RRSSVHFDSQ DRYIVGANRD DSGSARYSKT LPVASLRYQA TPDLALYGSI GRGFETPTLN
ELSYRAGGAS GLNFALRPSV NDSVELGAKA RLGGGLLTAA LFQTRTRDEI VTDTNTGGRA
TFQNAGRTRR NGFELAWQHE TASHWRTQLA YTWLDARYRD AFCSPSPCAA SNTVAAGNRI
PGIARQSLFA SLGWVPPEGW RAGVEMRALG RMQANDANTA SAPGYAVAAL YAGYLKKWER
WEFNAFARVD NLFDRRYVGS LIVNEGNARY YEPAPGRNWT VGLSGAYRF
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