| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1122 |
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| Symbol | |
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| ID | 7969644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1231907 |
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| End bp | 1234012 |
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| Gene Length | 2106 bp |
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| Protein Length | 701 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791718 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002943039 |
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| Protein GI | 239814129 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.625422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGGT TATTGGCGGG GCGCAGGGTC GCATCGGTTC TGGCAGGCTG CATGGCGGTC
TACGTGCATC ACCAGGTCCT GGCCCAGACC GCGACGGCGC CCGGCGCCTT GCCGGAGGTG
AAGGTCGATG CGAGCGCCGA GGCCGAAACC GCAACCTCGC CGGTGATCGG CTACCGCGCC
CGGAACGCCG CCACCGCCAC CAAGACCGAC ACGCCGCTGG CCGAAACGCC CCAATCGATC
ACCGTGGTCA CGCGCGACCA GATGGTGGAC CAGGGCGCGG GCAATGTTCA GGACGCGCTC
AACTATGCGG CCGGTGTGCG CTCCGATGCC TATGGCCAGG ATTCGCGGAC CGACTCGGTG
CGCATCCGCG GCGCCACGCC CGACGTCTAC CTGGACGGCC TGCGCCAGTC CTATGGCTAC
TACACCAGCA CCACGCGCAC CGAGCCCTAC ACGCTGGAGC GGCTCGAAGT GCTGCGCGGC
CCGGCGGGCA TGCTGTTCGG CGCGGGCACC GCGGCGGGCG TGGTCAACAT GGTCAGCAAG
CGTCCGCTGC AGGAAACCCA GCGCGAAGTG GGCGTGCAGT TCGGCAGCTT CGGCCGCAAG
CAGGTCCAGG CCGACCTCAC GGGGCCGCTG AATGCCGACG GCAGCCTGTC GTACCGGCTG
ATCGCGTTGC AGCGCAAGTC GGACTCGCAG GTCGACCATG TGCCCGACGA CCGCAGCGTC
ATTGCGCCTT CGCTGACCTG GCGGCCCAGC GCGGCGACCT CGCTCACCTT GCAGGGGCTG
TGGCAAAAGG ACAAGAGCGG CAGCAGCTCG CAGTTCCTTC CGTGGGAGGG CACCTTGCTG
CCGAACCCGA ACGGACGCAT TCCCGCCAGC CGCTTCATCG GCGAGCCGGG CTTCGACTAC
TACGACAGCG AACGCAAGAC CTTCGGCTGG CAGTTCGAGC ACAAGTTCAA CGAGAACTGG
CGCGTGCGGC AGAACTTCCG CTACGCGAAA AACGAGAACG ACAACCGCTA CCACTATGGC
GCTGCCTTCA GCGGGGCCGA AAGCTGGGAC GCCACCGATC CGATCTTCAA GCGCGTGCTC
GGCCGCTACT ACGACAGCTA TCTCACGCGC AACCGCACGC AGACGCTCGA CAACCATGTC
GAGGGCCATT TCGAGACCGG CGCCGTGAAG CACACGCTGC TGGTCGGCGC GGATTTCTCC
AGGCAGCGCG AGAACGTCTG GGGCGCGACG ACCTTCGACA CCATCGACGT CTACGCGCCG
GTGTACGGCC ACGTCGACCT GCCCGAGCGC GTGGCGCTGC CGCGCACCCG CCAGCGCCAG
ACCGGCGTCT ACCTGCAGGA CCAGGTCAAG CTCGACAACT GGATCTTCGT GGCGGGCCTG
CGGCACGACA GGGCGGTGTC CAGCGCGGCA GGCAGCGACG AGCAGAAGAG CAGCGCAACC
ACCAAGCGCT TCGGCCTGAT GTACGCCATG CCCTCGGGCT GGTCGCCGTA TCTGAGCTAC
ACCGAATCGT TCACGCCGCA GTCGCCGCGC AACGGACAGA TCTTCACGCC CTTGCGCGGT
GAGCAATGGG AAGCCGGTGT GAAGTACGAG CCGAAGGACC GCGCGCTGGC GTTCAGCGCG
GCGGTCTACG ATCTGCGGGA GAAGAACCAG ATCACCTCGC CGTCGCCGAA TGTGTACACG
CAAGCCGGCA AGACCAAGAC CCGGGGCGTC GAGCTCGAGG CCAAGGGCTC CATCGGCCCC
GACCTCGACC TCGTCGCGCA CTACAACTAC ACCGATGCCG ACGAGCAGAT CGAGGGCCTG
CCCAAGCACC AGGCGAGCGT CTGGGCCAAG TACCGCTTCT CGATCGGCGG CGTCAGCGGC
TTCTCGGCCG GCGCCGGCGT GCGCGTGATG AGCTCGTTCC GCGACCTGCA ATTCGGCGTG
GGACCGCGCG TGCCGGGCGT TGCGCTGGCC GACCTCGTGT TTGCCTACGA CACGGCGCAG
TGGCGCTATG CGCTCAACAT CAACAACGTG ACGGACAAGG CGTACTTCAG CACCTGCCTG
TCGCGCGGCG ACTGCTGGTA CGGCTCGCGC CGCAACGTCG TGGCCAGCGC GACCTACCGT
TTCTAA
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| Protein sequence | MARLLAGRRV ASVLAGCMAV YVHHQVLAQT ATAPGALPEV KVDASAEAET ATSPVIGYRA
RNAATATKTD TPLAETPQSI TVVTRDQMVD QGAGNVQDAL NYAAGVRSDA YGQDSRTDSV
RIRGATPDVY LDGLRQSYGY YTSTTRTEPY TLERLEVLRG PAGMLFGAGT AAGVVNMVSK
RPLQETQREV GVQFGSFGRK QVQADLTGPL NADGSLSYRL IALQRKSDSQ VDHVPDDRSV
IAPSLTWRPS AATSLTLQGL WQKDKSGSSS QFLPWEGTLL PNPNGRIPAS RFIGEPGFDY
YDSERKTFGW QFEHKFNENW RVRQNFRYAK NENDNRYHYG AAFSGAESWD ATDPIFKRVL
GRYYDSYLTR NRTQTLDNHV EGHFETGAVK HTLLVGADFS RQRENVWGAT TFDTIDVYAP
VYGHVDLPER VALPRTRQRQ TGVYLQDQVK LDNWIFVAGL RHDRAVSSAA GSDEQKSSAT
TKRFGLMYAM PSGWSPYLSY TESFTPQSPR NGQIFTPLRG EQWEAGVKYE PKDRALAFSA
AVYDLREKNQ ITSPSPNVYT QAGKTKTRGV ELEAKGSIGP DLDLVAHYNY TDADEQIEGL
PKHQASVWAK YRFSIGGVSG FSAGAGVRVM SSFRDLQFGV GPRVPGVALA DLVFAYDTAQ
WRYALNINNV TDKAYFSTCL SRGDCWYGSR RNVVASATYR F
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