| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1105 |
|---|
| Symbol | |
|---|
| ID | 7969627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1211467 |
|---|
| End bp | 1212531 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791701 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_002943022 |
|---|
| Protein GI | 239814112 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.458506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACCC CACCGAAGAC CCCGAACCTG ATCCCCGCCA GGCCCCGCAT CGCCGTGCTG
CTCGGCGACC CCGGCGGCAT CGGCCCCGAG ATGGCCGTGA AGCTGCTCGC GCGCCAGCGC
AACCTGGACG CCGCGCGCGT GCTGCTGATC GCCGACCCGG TGGTGCTGGC CGCGGGCGAG
CGCGTGGCGG GCGTCAAGCT CGATCCGCTG CGGATCGACG GACTCGACGA CCTGCGCTTC
GAGCACGGCC GCCCCACCCT GCTGCAGCGC GACTGGATGC AAGGCCGGGA GCCGGTGCTC
GGCGAGTCGA ACGAGGCCTC GGGCCGCGCC TCCTTCGAGG CGCTGGAACT GGCCACCGCG
GCCGTGCGGC GCGGCCAGGC CGAGGGCATT GTCTTCGCGC CGCTCAACAA GCATTCGCTG
CGGCTCGGTG GCCTCGTGCA CGAGGACGAG TTGCGCTACA TGCAGGAGCG CTTCGCGGTG
ACGGGCTTCG TCTGCGAATT CAACCTCACG GGTTCGCTCT GGACCTCGCG CGTGACCTCG
CACATTCCGC TGAAGGATGT GGCGAGCCAC ATCACGGTGG AGGGCGTGGG CGATGCGGTG
AAGATCATTG CATCGGCGCT GCGCCGTGCG GGCGTGGCAC AGCCGCGCAT CGCAGTGACG
GGGCTCAACC CGCATGCGGG CGACGGCGGC TCGATCGGCA TGGAAGAGAT CGAGATCATC
GCACCGGCCA TCGAGCGGCT GCGCGCCGAG GGCTACGACG CGCGCGGTCC GTTCTCGCCC
GACACGGTGT TCATCGGCGC GCGCCGCGGC GACGTGGATG CGGTGGTGTC GATGTACCAC
GACCAGGGCC AGATCGCGAT GAAGCTCATG GGCTTCGAGC AGGGCGTGAC GCTGCATGGC
GGCCTGCCCG TGCCGGTAGC CACCTCGGCC AGCGGCAGCG CCTTCGACAT CGCGGGCAAG
GGCGTCGCGC AGATCGAAGG CCTGCAGCAG GCCTTCGACC TGTGCGTGCG CATGGCCAGC
GGTGGGCCGG TGCGCACGCT TTCCAGCGCG GAAACTGCAG CCTGA
|
|---|
| Protein sequence | MPTPPKTPNL IPARPRIAVL LGDPGGIGPE MAVKLLARQR NLDAARVLLI ADPVVLAAGE
RVAGVKLDPL RIDGLDDLRF EHGRPTLLQR DWMQGREPVL GESNEASGRA SFEALELATA
AVRRGQAEGI VFAPLNKHSL RLGGLVHEDE LRYMQERFAV TGFVCEFNLT GSLWTSRVTS
HIPLKDVASH ITVEGVGDAV KIIASALRRA GVAQPRIAVT GLNPHAGDGG SIGMEEIEII
APAIERLRAE GYDARGPFSP DTVFIGARRG DVDAVVSMYH DQGQIAMKLM GFEQGVTLHG
GLPVPVATSA SGSAFDIAGK GVAQIEGLQQ AFDLCVRMAS GGPVRTLSSA ETAA
|
|---|
| |