| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1100 |
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| Symbol | |
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| ID | 7969622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1206883 |
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| End bp | 1207542 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791696 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
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| Protein accession | YP_002943017 |
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| Protein GI | 239814107 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACGTGG TTTTCGATCT TGGCGCCGTG CTGCTGGCAT GGGAGCCCAC CCGGCTGGTG
CAGACCCATC TTCCCGAGCA TGCCCCCACC GAAGCCGCCG CGGCGGCGCT GGGCCGGGCG
CTTTTCCACC ATGACGACTG GATGAGCTTC GACTGCGGCA TGCGCTCGCT GGACGAGGCC
ATCGCGCGCA TGGCCCGGCG GCTGTCGCTG CCGGCGGACC GGCTCGACGC CATGCTCGGC
ACGCTCGGGG AGCGCCTGGA GCCCATTGCC GCCACCGCGG AACTGCTCGA CGGGCTGTTC
GCGCGGCGCG AGGCCGGCGA GGCGCTGCGC CTGTACTACC TCTCGAACAT GCCGGCGCCC
TACGCGCGCG CGGTCGAACG CCGGCACGGC TTCATGCGGC GCTTCGACGG CGGCGTGTTC
TCGGGCGACG TGAAGTTCAT CAAGCCGGAT CGCGAAATCT ACGAGCTGCT GGCGGTGCGC
CATGCGCTCG AGCCCGCCGA GACGGTGTTC ATCGACGACT CGGCCGCCAA TGTGGAGGCC
GCGCGGGCCT TCGGCTGGCA GGCCATCCAC TGCACGCACC CCGCGGCGCT GGCGGCGCAA
CTGGCGCGCC ATCTGCCGGC TGTGCCGGCT GGCCCGGTTG CGCCGGCTAT CGGCCGGTGA
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| Protein sequence | MNVVFDLGAV LLAWEPTRLV QTHLPEHAPT EAAAAALGRA LFHHDDWMSF DCGMRSLDEA
IARMARRLSL PADRLDAMLG TLGERLEPIA ATAELLDGLF ARREAGEALR LYYLSNMPAP
YARAVERRHG FMRRFDGGVF SGDVKFIKPD REIYELLAVR HALEPAETVF IDDSAANVEA
ARAFGWQAIH CTHPAALAAQ LARHLPAVPA GPVAPAIGR
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