Gene Vapar_1091 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1091 
Symbol 
ID7969613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1195252 
End bp1196838 
Gene Length1587 bp 
Protein Length528 aa 
Translation table11 
GC content65% 
IMG OID644791687 
Productextracellular solute-binding protein family 5 
Protein accessionYP_002943008 
Protein GI239814098 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.264739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTTC AGAAGAAGGC GGCCGCGGTC GCAGTTTTGT GCGTGCTGGG CACCGCCAGC 
CTGGTGGCCG GCGCGCAGAC CATCCGCGTG GCGAACCAGG GGGACGCGCT GTCGCTCGAT
CCGCACTCGC TCAATGAGTC GCTGCAGCTG AGCACCACCG CCAACGTCTA TGAAACGCTG
GTCGGGCGCA ACAAGGACCT GAGCGTTGCG CCGCTGCTGG CGACCAGCTG GAAACAGACC
TCGCCCACCG TGTGGCGCTT CGAACTGCGC AAGAACGTCC AGTTCCACGA CGGCACGCCC
TTCACGGCCG ACGACGTGCT CTTCAGCTTC GCGCGCGCCT CGGGCGACGG CTCGGACATG
AAGTCCAACA CCACCGACAT CAAGGAAGTG CGCAAGGTCG ACGCGCACAC CATCGAGATC
GAGACCAAGG GCCCGTTCCC CATTCTTCCC GACGTCATCA CGCAGCTCAT GATCATGAGC
AAGAAGTGGT GCGAGGAGAA CAAGGCCGTC ACGCCAGTCG ACCGGCGCAA GGGCATCGAG
AACACCGCCT CGTTCAAGGC CAACGGCACC GGCCCGTTCC GCGTGCGCGA GCGCCAGCCT
AACGTGCGCA CCGTCTTCAC GCGCAACCCG ACCTACTGGG GCAAGATCGA AGGCAACGCG
CAGGAGATCA TCTTCACGCC GATCGCCAAC CCGGCCACGC GCGTCGCCGC GCTGATCTCC
GGCGAGGTCG ACGTCATGGA GCCGGTGCCC GTGCAGGACA TCGCGCGCGT CAACGCCAGC
CCGACGGCAC GCGTCATCTC CGGCCCCGAG CTGCGCACCA TCTTCCTGGG CATGGACCAG
AAGCGCGACG AGCTGCTGTA CTCCAGCGTC AAGGGCAAGA ACCCGTTCAA GGACAAGCGC
GTGCGCCAGG CCTTCTACCA GGCCATCGAC ATCGCCGGCA TCCAGCGCAC GGTGATGCGC
GGCGCCTCGC GCCCCACCGC GCTGATGGTC GGCCCCGGCA TCAACGGCTG GAACGAAGCG
CAGGACAAGC GCCTGCCCTA CGACGTCGAG GCCGCCAAGA AGCTGCTGGC CGAAGCCGGC
TATCCGAACG GCTTCGAAGT GACGATGAAC TGCCCGAACG ACCGCTACGT GAACGACGGC
CAGATCTGCC AGAGCGTGGC CTCCAACCTG GCGAAGATCG GCGTCAAGAT CAACCTCGCG
GCCGAGACCA AGGGCACCTA CTTCCCGAAG GTGCTGCGCC GCGACACCAG CTTCTACATG
CTGGGCTGGA CGCCCACCAC CTACGACTCG CACAACGCGC TCACGGCACT GATGGCCTGC
CCCGACGACA AGACCGGCGC CGGCCAGTTC AACCTGGGCG CCTACTGCAA TCCCAAGGTC
GACGAGCTGA CCAAGAAGAT CCAGTCGGAA ACCGACAAGC CCAAGCGCGA CGCGATGATC
AAGGAAGCCT TCGACCTGCA CACCGCCGAC GTCGGCCACC TGCCGCTGCA CCAGCAGACG
CTGGCCTGGG GCGTGAGCAA GAAGGTGGCG CTCACGCAGA TGGCCGACAA CTACATGCCC
TTCAAGTGGA TGAGCATCAA GCCGTAA
 
Protein sequence
MSFQKKAAAV AVLCVLGTAS LVAGAQTIRV ANQGDALSLD PHSLNESLQL STTANVYETL 
VGRNKDLSVA PLLATSWKQT SPTVWRFELR KNVQFHDGTP FTADDVLFSF ARASGDGSDM
KSNTTDIKEV RKVDAHTIEI ETKGPFPILP DVITQLMIMS KKWCEENKAV TPVDRRKGIE
NTASFKANGT GPFRVRERQP NVRTVFTRNP TYWGKIEGNA QEIIFTPIAN PATRVAALIS
GEVDVMEPVP VQDIARVNAS PTARVISGPE LRTIFLGMDQ KRDELLYSSV KGKNPFKDKR
VRQAFYQAID IAGIQRTVMR GASRPTALMV GPGINGWNEA QDKRLPYDVE AAKKLLAEAG
YPNGFEVTMN CPNDRYVNDG QICQSVASNL AKIGVKINLA AETKGTYFPK VLRRDTSFYM
LGWTPTTYDS HNALTALMAC PDDKTGAGQF NLGAYCNPKV DELTKKIQSE TDKPKRDAMI
KEAFDLHTAD VGHLPLHQQT LAWGVSKKVA LTQMADNYMP FKWMSIKP