| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1089 |
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| Symbol | |
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| ID | 7969611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1192962 |
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| End bp | 1193942 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791685 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943006 |
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| Protein GI | 239814096 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.19101 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGCTT TCGTCCTGCG CCGCCTGATC CAGGCCGTGA TCGTCATGAT CGCGGTCGCG
TTCATCGCCT TTCTTCTCTT CCAATATGTG GGCGACCCCG TCGTCTTTCT GCTGGGCCAG
GATGCCAAGC CCGAGCAGAT CCGCGAGCTG CGCGCCGCAT TGGGGCTCGA CCAGCCCTTC
TTCGTGCAGT TCTGGCACTT TCTCGTCAAC GCGGCCCAGG GCGAGTTCGG CCTGAGCCTG
CGCCAGGGCG CGAAGGTCTC GCGCCTCATC GGCGAGCGCT TTCCGGCCAC GCTCGAGCTC
GCGCTGGTGG CGGCCGTGCT GGCGCTGTTC ATCGGCATTC CGATGGGCGT GTATACCGCG
CTGCGCCGCG GCACTTTCCT GAGCCAGGTG TTCATGACCG TGTCGCTGCT CGGCGTGTCC
CTGCCCACCT TCCTGATCGG CATCCTGCTG ATCCTGGTGT TTGCGGTGAT GCTGGGCTGG
TTCCCGAGCT TCGGGCGCGG CGAGACCGTG CAGTTCGGCT GGTGGAGCAG CGGCCTGTTC
CGGGCCGACG GATGGCATCA CATCATCCTG CCGGCCGTCA CGCTCGCGAT CTTCCAGCTG
ACCCTGATCA TGCGGCTGGT GCGCGCCGAG ATGCTCGAGG TCCTGCGCAC CGACTACATC
AAGTTTGCGC GCGCCCGGGG CCTCACGAAC CGCGCCATTC ATTTTGGCCA TGCGCTCAAG
AACACGCTGG TGCCGGTGAT GACCATCACG GGCCTGCAGC TCGGCGGCCT CATCGCCTTT
GCCATCATCA CCGAGTCGGT GTTCCAGTGG CCCGGCATGG GGCTCCTGTT CATCCAGGCC
GTGACCTTTG CCGACGTGCC GGTGATGGCG GCCTACCTGT GCCTCATTGC CTTGATCTTC
GTGGTGATCA ACCTGGTGGT CGACCTGCTG TACTTCGTGG TCGATCCGCG GCTGCGCGTG
GGCAAGGCGG GAGGACATTG A
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| Protein sequence | MIAFVLRRLI QAVIVMIAVA FIAFLLFQYV GDPVVFLLGQ DAKPEQIREL RAALGLDQPF
FVQFWHFLVN AAQGEFGLSL RQGAKVSRLI GERFPATLEL ALVAAVLALF IGIPMGVYTA
LRRGTFLSQV FMTVSLLGVS LPTFLIGILL ILVFAVMLGW FPSFGRGETV QFGWWSSGLF
RADGWHHIIL PAVTLAIFQL TLIMRLVRAE MLEVLRTDYI KFARARGLTN RAIHFGHALK
NTLVPVMTIT GLQLGGLIAF AIITESVFQW PGMGLLFIQA VTFADVPVMA AYLCLIALIF
VVINLVVDLL YFVVDPRLRV GKAGGH
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