Gene Vapar_1087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1087 
Symbol 
ID7969609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1190607 
End bp1191236 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content72% 
IMG OID644791683 
Productputative ubiquinone biosynthesis protein 
Protein accessionYP_002943004 
Protein GI239814094 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2941] Ubiquinone biosynthesis protein COQ7 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.57185 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTCCA CGCTCGACCC CGTCCTGACT GCGGCTGATG CGGCATTGCG CACTCTTTTT 
GCCCGGCCCC ATGCAACAAG GGCCGCGCCC GCGCCGGCCC AGGCGCCGGG CGAGATGACC 
GATTCGGAGC GGCGCGAGGC CGGGGCATTG ATGCGGGTGA ACCACGTGGG CGAGGTGTGC 
GCCCAGGCGC TCTACACCGC CCAGGCCGCG GTGGCGCGCG ACCCGGTCCT GCGGGCCCGC 
CTGCTCGAGG CCTCGCACGA AGAAGCCGAT CACCTGGCCT GGACGCGCCA GCGGCTGGAC 
GAACTCGGCG CCCGGCCATC CGTGCTGAAC CCGCTCTGGT ATGCGGGCGC TTTCGGCCTG 
GGCCTGGTGG CGGGGCGCCT GGGGGACCCG CTGAGCCTCG GGTTCGTCGC AGAAACCGAA 
CGCCAGGTGG AAGCCCACCT GGAGAGCCAT CTCGGCCGCC TGCCGGCCGC CGACAGTGCC 
TCCAGGGCCG TGGTCGAGCA GATGAAGATC GACGAAGCGC AGCACGCCGC GCAAGCCATC 
GATGCCGGCG CGGCGGAACT GCCGGCCCCG GCCAAGGCCC TGATGCGGCT CGCCTCCCGC 
GTGATGACCA CGGTGGCGCA CCGGATCTGA
 
Protein sequence
MTSTLDPVLT AADAALRTLF ARPHATRAAP APAQAPGEMT DSERREAGAL MRVNHVGEVC 
AQALYTAQAA VARDPVLRAR LLEASHEEAD HLAWTRQRLD ELGARPSVLN PLWYAGAFGL 
GLVAGRLGDP LSLGFVAETE RQVEAHLESH LGRLPAADSA SRAVVEQMKI DEAQHAAQAI 
DAGAAELPAP AKALMRLASR VMTTVAHRI