| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1085 |
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| Symbol | |
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| ID | 7969607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1188677 |
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| End bp | 1189822 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791681 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_002943002 |
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| Protein GI | 239814092 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.923155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTCGACG CTTCGATCAG CGGCTACTCG AACAGCTCGC GCGACCTGAA CCATGGCGTG
ACGTACAACG CCTTCGGCTT CCCGGTTGCC TATAACCCGT TCTACGTCAA CAAGGGCAGC
GTGCGTACCA GCAGCGTTGG CATGACCCAC TCGGGCTACA ACTCCAGCCG CCTGGGCTTC
CGCGGTACGG AAGACCTCGG TGGTGGCCTT GCAGCGAGCT TCTGGCTCGA AGCGCCGGTC
GCCAACGACG ATGGCAGCCA AGGCGTGGCC AATTTCTCCC GCCGTTCCAC GGTGAGCCTG
TCGGGTGGTT TCGGTGAAAT CCGCCTCGGC CGCGACCTGA CCCCCTCGTT CCACAACAAC
TCCACCTTCG ATCCCTTCGG CACCAACGGC GTTGGCACCA ACCTGATCCA GACGGCCACC
AGCGCATTTG GCAATCCCAC GCGCGCCAGC AACTCGGTCA GCTACTTCCT GCCGCCGAAC
CTCGGCGGCT TCTACGGCCA GCTGATGTAC GGCTTCCACG AGAAGACCAA GTACAGCCCG
GGCCTGGCCA CGCCTCACGC GGCCGACAAC TCGCGCACCG GCCGATACAT CGGCGGCCGC
TTCGGCTATG CCAACGGTCC GCTCGACGTT GCAGCGGCTT ACGGCAGCAA CACCGTGGGC
GACGACTACT ACGCCGGCAC GACCACCAAG GTCAACACCT TCAACCTCGG CGCTTCGTAT
GACTTCGGTC CTGCAAAGCT CTTCGGCGAA CTGTCCCACG CCCGCGAAAA GACCGATATC
GACGGCGACT TCTTCGCCCG CCCGGCTTCC GTGGCATCGA ACAAGCTCAA TGGCTGGCTG
CTGGGCGTGA CGGTTCCGGT CGGTGCCGGC CTGATCCGCG CGTCGTACTC GGCCGTGAAG
TACAAGTCGG GCGACAACAA CCCGTTCTTC AACGAACCGA ATCCGAAGGC CAACAAGCTG
GCACTGGGCT ACGTGCACAA CCTGTCGAAG CGCACGGCCC TGTACGCAAC GGTTGCCCGC
ATCAGCAACA AGAACGGTGC AGACCTGAGG GTCAGCCCCG ATTTCAGCCC GAAGTTCATC
AGCAACGACA TCTTCACCCC GAAGACCTCG ACCGGCTACG ACTTCGGCAT CCGCCACGCC
TTCTGA
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| Protein sequence | MVDASISGYS NSSRDLNHGV TYNAFGFPVA YNPFYVNKGS VRTSSVGMTH SGYNSSRLGF
RGTEDLGGGL AASFWLEAPV ANDDGSQGVA NFSRRSTVSL SGGFGEIRLG RDLTPSFHNN
STFDPFGTNG VGTNLIQTAT SAFGNPTRAS NSVSYFLPPN LGGFYGQLMY GFHEKTKYSP
GLATPHAADN SRTGRYIGGR FGYANGPLDV AAAYGSNTVG DDYYAGTTTK VNTFNLGASY
DFGPAKLFGE LSHAREKTDI DGDFFARPAS VASNKLNGWL LGVTVPVGAG LIRASYSAVK
YKSGDNNPFF NEPNPKANKL ALGYVHNLSK RTALYATVAR ISNKNGADLR VSPDFSPKFI
SNDIFTPKTS TGYDFGIRHA F
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