Gene Vapar_1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1082 
Symbol 
ID7969604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1185139 
End bp1185774 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content75% 
IMG OID644791678 
Producthypothetical protein 
Protein accessionYP_002942999 
Protein GI239814089 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.537325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGTC CCTATTCCGC CGCGCACTGG CATGCCCCCG TTGCAACCAC GGGCCTGTGG 
GCGCTGGCCG CGGCAGCGGC GGTGTTCTGG GGGCTGCGGC TCGCGGCGCC CCCCGAGCCC 
GTGGCCGCGG CGGCCACCAT GCCCCGTGCG GCGGTCTCGG CCGACGCGGA TGCGGTTGCG 
CGGCTGCTCG GCGTGGTTTC GGGCGCCGAC GCGGCGCCCG CCGCCCCCGA GGCGGCCAGC 
CGCTTTGCGC TGTCGGGCGT GGTGGCGGAT CCGTTCAACC AGGGCGCCGC CCTGATCTCC 
ATCGATGGCA AGCCGCCGCG TCCGTTCCGC GTCGGTTCGC GCGTGGGTGA CAACTATGTG 
CTGCAGTCGG TCGGGGTGCG CGCGGCAACG CTCGGCACCA GCGCGCAGGG GCCGGCGGCC 
TTCACGCTGC AGCTGCCCGT GCGTGCGCCG ATCAGCTTCG GCAGTCCCGC TCCGGCGGGG 
ATGCCGGCAC CGACGGCCAG GCCGAGCGGG CTTTTCCCGG CCACGGTGCC TCCCGTGGTC 
GCGCCGCCTG CCGGCGGAGC TGCACCGTCA CAGGCATCGC AAGCGCCGCC GTCGGATTCT 
GCGCAGCAGC CGCCCGCGCA GCCTGCGCAG CAATAA
 
Protein sequence
MTSPYSAAHW HAPVATTGLW ALAAAAAVFW GLRLAAPPEP VAAAATMPRA AVSADADAVA 
RLLGVVSGAD AAPAAPEAAS RFALSGVVAD PFNQGAALIS IDGKPPRPFR VGSRVGDNYV 
LQSVGVRAAT LGTSAQGPAA FTLQLPVRAP ISFGSPAPAG MPAPTARPSG LFPATVPPVV 
APPAGGAAPS QASQAPPSDS AQQPPAQPAQ Q