| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1080 |
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| Symbol | |
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| ID | 7969602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1184210 |
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| End bp | 1184674 |
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| Gene Length | 465 bp |
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| Protein Length | 154 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791676 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_002942997 |
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| Protein GI | 239814087 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.28383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACAT CGGCAGCTGG CAGTAGGCGC ACGGGCGGCT TCACGCTGCT CGAGCTGATC
GTGGTGATCG CGATCATCGC GATCGCAACG GCCGGCGTGA GCTTCGCGCT GCGCGACACC
AACGCGGCCC GGCTCGACCG CGAGGCCGAC CGGCTGGCCG CGCTGCTCGA ATCGGCCCGT
GCCCAGTCGC GCGCGAGCGG CGTTGCGGTG CGGTGGCGCC TCGTGGAAGG CGGCAGCTTC
GTGTTCGACG GCCTGCCGAC CGGTGCCTTG CCCAGCGGCT GGGCCGCGAG CGGCATCAGC
GCCACGGCTT CGCTGGCCGG CGGCGCGCCG GTGGCGGCGG TGCAGCTGGG CCCCGACCCG
ATCATTGCCG CGCAGCAGAT CGTGCTGTAT TCCGAAGGCC CGCCCGCGCG TTCGCTGCGC
ATTGCCACCG ACGGCCTCAG GCCCTTCACC GTGAGCACGC CGTGA
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| Protein sequence | MPTSAAGSRR TGGFTLLELI VVIAIIAIAT AGVSFALRDT NAARLDREAD RLAALLESAR
AQSRASGVAV RWRLVEGGSF VFDGLPTGAL PSGWAASGIS ATASLAGGAP VAAVQLGPDP
IIAAQQIVLY SEGPPARSLR IATDGLRPFT VSTP
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