| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1079 |
|---|
| Symbol | |
|---|
| ID | 7969601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1183839 |
|---|
| End bp | 1184213 |
|---|
| Gene Length | 375 bp |
|---|
| Protein Length | 124 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791675 |
|---|
| Product | general secretion pathway protein I |
|---|
| Protein accession | YP_002942996 |
|---|
| Protein GI | 239814086 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.637653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACATCCA GGCGCAATTC GGCATGCGGC GGATTCACGC TGATCGAGGT GCTGATTGCG
CTCGGCATCG TCGCGCTGGC GCTCGCGGCG GGCTCGCAGG CCACGATGTC GCTCACGCGC
AATGCGCAGC GCCAGTCCGA CCTGCTGCTG GCCGACCTGT GCGCGGAAAA CGAGCTTGCC
AAGGCGCGGC TCGCCAGGCA GATGCCCGCG GTAGGCGATT CGGGCTCGAT CTGCGTGCAG
GCCGGCGTCT CGTTCAACGT GACCACCTCC ACCATCGCCA CGCTCAACCC CAATTTCCGG
CGCGTCGACG TGCAGGTGCG CGACGAGGCC AACGCGCCGG TGCTGCGCAT CTCGACCGTG
GTGGGCCGCT TCTGA
|
|---|
| Protein sequence | MTSRRNSACG GFTLIEVLIA LGIVALALAA GSQATMSLTR NAQRQSDLLL ADLCAENELA
KARLARQMPA VGDSGSICVQ AGVSFNVTTS TIATLNPNFR RVDVQVRDEA NAPVLRISTV
VGRF
|
|---|
| |