| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1071 |
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| Symbol | |
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| ID | 7969593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1174507 |
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| End bp | 1175742 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791667 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_002942988 |
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| Protein GI | 239814078 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.299024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCCT ATTCCTTCGA AGCCATCGAT GCCAGCGGCC AGTCGCGCGA AGGCGTGCTC
GAGGCCGACA CCGCGCGCAG CGCCCGCAGC CTGCTGCGCG CGCAGGCGCT CATTCCGCTG
TCGGTCACGC CGGTGGGCAG CAGCCACGTC AACGGCACCG GCAACGGCGG CCTGCGCCGC
TGGCTGGGCG GCGGCGCCCG GGTCTTCAGC TCCACCGGCC TTTCGGTCTG GACGCGCCAG
CTCGCGGGCC TGGTCTCTTC CGGCCTGCCG CTCGAACGCG CCCTGACCGC GCTCACCGAC
GAAGCCGAGA CCGAGCCGCA GCGCAACCTG GTCGCTTCGC TGCGCGCCGA GGTCAACGCG
GGCTCGCCCT TCGCACGCGC GCTCGCGGCC CATCCGCGCG AGTTCTCGCC CATCTACACC
GCCGTGATCG GCGCGGGCGA ACAAAGCGGC AACCTCGGCC TCGTGCTCGA CCGCCTCGCC
GACGACCTCG AGGAGCGGCA GGCATTGCAG CAGAAGCTCA TCGGCGCGGC GCTCTATCCG
GCCATCGTCA CGCTGGTGGC GATCGTGATC GTGATCTTCC TCGTGAGCTA CGTGGTGCCG
CAGGTGGCGC AGGTGTTCGC GGGCACCAAG CGTTCGCTGC CTTTCCTCAC CACCGTCATG
CTGTCGCTGA GCGCGGCGGT GCGCAGCTAC GGCTGGTGGA TGCTGGGCGG CGTGGTGCTG
GCCGCCATCG CCGCGCGATT GACGCTGGCG CAGGAGGCCT TGCGCCTGAA GTTCGACGCC
GCCTGGCTGC GGTTGCCCCT CGTGGGCAAG CTCGCGCGCG GCTACAACGC GGCGCGCTTT
GCCAGCACGC TGGCCATGCT GGCCACCGCC GGCGTGCCGA TCCTGCGCGC GCTGCAGGCG
GCGTCCGAAA CGCTGGGCAA CCGCGCTATG CGCGCCGATG CGCTCGACGC GCTGGTGCTG
GTGCGCGAAG GCGCGCCGCT GGCCTCGGCG CTGGCGCAGA AAAAACGCTT TCCAGGGCTG
GTCTCGATGT TCGCGCGACT GGGCGAGCAG ACCGGCACGC TGCCGCTGAT GCTGCAGCGC
GCCGCCAACC AGCTGGGCGC CGAAGTGCAG CGCCGCGCCA TGCACCTGGC CACCATCCTG
GAGCCGCTGC TGATCGTGGC CATGGGCGGC GTGGTGATGC TCATTGTGCT GGCCGTGATG
CTGCCTATCA TCCAGCTCAA CCAGTTCGTC AAGTAA
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| Protein sequence | MPAYSFEAID ASGQSREGVL EADTARSARS LLRAQALIPL SVTPVGSSHV NGTGNGGLRR
WLGGGARVFS STGLSVWTRQ LAGLVSSGLP LERALTALTD EAETEPQRNL VASLRAEVNA
GSPFARALAA HPREFSPIYT AVIGAGEQSG NLGLVLDRLA DDLEERQALQ QKLIGAALYP
AIVTLVAIVI VIFLVSYVVP QVAQVFAGTK RSLPFLTTVM LSLSAAVRSY GWWMLGGVVL
AAIAARLTLA QEALRLKFDA AWLRLPLVGK LARGYNAARF ASTLAMLATA GVPILRALQA
ASETLGNRAM RADALDALVL VREGAPLASA LAQKKRFPGL VSMFARLGEQ TGTLPLMLQR
AANQLGAEVQ RRAMHLATIL EPLLIVAMGG VVMLIVLAVM LPIIQLNQFV K
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