Gene Vapar_1065 details

Gene Information

• Locus tag: Vapar_1065
• ID: 7969587
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1168758
• End bp: 1169318
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791661
• Product: phosphonate degradation operons associated HDIG domain protein
• Protein accession: YP_002942982
• Protein GI: 239814072
• COG category: [R] General function prediction only
• COG ID: [COG4341] Predicted HD phosphohydrolase
• TIGRFAM ID: [TIGR03276] phosphonate degradation operons associated HDIG domain protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACTCG ACCTCGCCGA AATCGCCCGC CTGTTCGCCG AGCGCGGCGG GGTTGCGTAT 
GCGGGCGAGC CGGTGTCGCA GCTCGAGCAT GCGCTGCAGT GCGCATGGCT GGCAGAGCAG 
GCCGGCGCGG GCGATGCACT GGTCACGGCC TCGCTGCTGC ACGATCTCGG CCACCTGCTG 
ATCGCCGAGC ACCAGACGCT GCCGCGCTCG CCCACCGAGC TGGGCATCGA CGACCGCCAC 
CAGTACATCG CCATGCCGCT CCTGCGCGGC GTCTTCGGCG CCGAGGTGCG CGAGCCGATC 
CGGCTGCACG TGGACGCCAA GCGCTACCTT TGCGCGACAC GGCCCGGCTA CTTCTCGCGG 
CTCTCGGCGG ATTCGGTGCG CAGTCTCGCG CTGCAGGGAG GCGTGATGGA CGAGGCCGCG 
GCGCAGCGCT TCGCCGAGCA GCGCTGGGCC GGCGATGCGG TGCGGCTGCG GCTGTGGGAC 
GAGGAAGCGA AGGTGCAAGG GCGCGAGACG CCGCCGCTCA AGCACTTCCT GGAAACAGCG 
GCACGGGTCA TGCTGCGCTG A 

 

Protein sequence

MTLDLAEIAR LFAERGGVAY AGEPVSQLEH ALQCAWLAEQ AGAGDALVTA SLLHDLGHLL 
IAEHQTLPRS PTELGIDDRH QYIAMPLLRG VFGAEVREPI RLHVDAKRYL CATRPGYFSR 
LSADSVRSLA LQGGVMDEAA AQRFAEQRWA GDAVRLRLWD EEAKVQGRET PPLKHFLETA 
ARVMLR