| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1060 |
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| Symbol | |
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| ID | 7969582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1162123 |
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| End bp | 1164405 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791656 |
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| Product | ABC transporter related |
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| Protein accession | YP_002942977 |
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| Protein GI | 239814067 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.120719 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACATC ACGATCCAGT CGGCACCCGG GAGGGCGAAA TCGAGGCGGC CTCAGACGCG
CTGAAAAGCC GGCTCGCAGC CGCGGAAAAC GTTCTGGTCA CACTGCCGGT TGACCTTGAC
GATGAACTTC TGTTTACCTT TGGGCTCGTG GCCCTCACCG ACCGGCGGCT GCTGGCGCTG
CAACCGGATG GCCAGTGGTG TGAGTGGACA CTATCAGATT CAGCCCTCCG TTTGCATTTG
AGCGACCATT CCGGCGTTGG AACGCTCGAT CTGGTGGGCG CCGAGGGCCG CCTTGCGCGC
TGGCGCTACA CGCTGGCGAG CCAGCCGGCC GCGCTGCGGC TGCTCAAGCT CTTCGGCCAG
CGCGAGAACG GCACTGTCGC CGAGGCGACA GCCGAACCCG ATGGCGACGA GCTGGCCCTG
CCCGACGCCG AGCTCCAGGC GCCGCCCTCC ACCTGGGTGC TGCTGCGGCT CGGCCGCTTC
GCCAAGCCCT ACCGCAAGCA GCTGATCGCG GGCTTCCTGC TGACGCTGGT CTCCACGGCC
GCGACGCTGG TGCCGCCCTA CCTGACCATC CCGCTGATGG ACGACATCCT GATTCCGTTC
CAGAACGGGC AGAAGATCGA CCCGGCGCGC GTCGGGCTCT ACCTGAGCGG GCTGCTGGGC
GCGGCGCTGG TCGGCTGGGG CCTGGGCTGG GCGCGCACCT ACCTGCTGGC GCTGGTGTCC
GAACGCATCG GCGCCGACCT GCGCACCACC ACCTACGAGC ACCTGCTCAC GCTGCCGCTC
GACTATTTCG GCGGCAAGCG CACCGGCGAC CTCATGGCGC GCATCGGCTC GGAAACCGAC
CGCATCAACG TGTTCCTCTC GCTGCACGCG CTCGACTTTG CGAACGACGT GCTGATGATC
GTGATGACCG CGGTCATCCT GGTTTCCATC AACCCGCTGC TGGCCGTGGT CACGCTGGTG
CCGCTGCCCT TCATCGCCTG GATGATCCAC GTGGTGCGCG ACCGGCTGCG CACCGGCTTC
GAGAAGATCG ACCGCGTGTG GTCCGAGGTC ACCAACGTGC TGGCCGACAC CATCCCGGGC
ATCCGCGTGG TCAAGGCCTT TGCGCAGGAG CGCCGCGAAG CCGAGCGCTT CCGCGTGGCC
AACGCCTACA ACCTGCAGGT CAACGACAAG CTCAACCGCA CCTGGTCGCT GTTCACGCCC
ACCGTCTCGC TCTTGACCGA GATCGGCCTG CTCGTGGTCT GGGGCTTCGG CATCTGGCAG
GTGGCGCGCG GCAGCATCAC GGTGGGCGTG CTCACGGCCT TCATTGCCTA CATCGGCCGC
TTCTACACGC GGCTCGACTC GATGAGCCGC ATCGTCTCGG TCACGCAGAA GGCGGCGGCC
GGCGCCAAGC GCATCTTCGA CATCCTGGAC CACGTGAGCA ACGTGCCCGA GCCCGCCAAC
CCGGTGAAGA TCGAGCGCGT GCAGGGCCGC ATCGAGATGA GCGGGCTGGG CTTTCGCTAC
GGCTCGCGCG CCGTGATCCA CGACCTCGAC CTGACCATCG AGCCCGGCGA GATGATCGGC
CTGGTGGGCC ACAGCGGCTC GGGCAAGAGC ACGCTGGTCA ACCTGATCTG CCGCTTCTAC
GACGTGACCG ACGGCGCCAT CAAGGTCGAC GGCACCGACA TCCGCCGCTT TGCCGTGGCC
GACTACCGGC GCCACGTGGG GCTGGTGCTG CAGGAGCCGT TCCTGTTCTT CGGCACCATC
GCGCAGAACA TCGCCTACGG CAAGCCCGAC GCCACACGCG CCGAAGTGGT GGCCGCCGCG
CGCGCCGCGC ATGCGCACGA CTTCATCCTG CGCCTGCCGC ACGGCTACGA CTCGCTGGTG
GGCGAGCGCG GCCAGGGCCT GTCGGGCGGC GAGCGGCAGC GCATCAGCAT TGCGCGCGCG
CTGCTGATCG ACCCGCGCAT CCTGATCCTC GACGAGGCCA CCTCGGCGGT GGACACCGAG
ACCGAGAAGG AAATCCAGAA GGCACTCGAC AACCTCGTGC AGGGCCGCAC CACCATCGCC
ATTGCGCACC GGCTGTCGAC GCTGCGCAAG GCCGACCGGC TGGTGGTCAT GGACCGCGGC
GAGGTGGTCG AGGTCGGTCC GCACGACGCT TTGATGGAGA AGCAGGGCGC CTACTGGCGG
CTCTACCAGG CGCAGCTGCG CCAGGCCGAC GAGGAGGCGA GCGAAGGCGC CGTCGACGAA
CGCGCCGGCG CGCAGCTGCC CTTGGTCATG AGCCATGCGG CCCATCCCGC CGGAGACGCA
TGA
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| Protein sequence | MQHHDPVGTR EGEIEAASDA LKSRLAAAEN VLVTLPVDLD DELLFTFGLV ALTDRRLLAL
QPDGQWCEWT LSDSALRLHL SDHSGVGTLD LVGAEGRLAR WRYTLASQPA ALRLLKLFGQ
RENGTVAEAT AEPDGDELAL PDAELQAPPS TWVLLRLGRF AKPYRKQLIA GFLLTLVSTA
ATLVPPYLTI PLMDDILIPF QNGQKIDPAR VGLYLSGLLG AALVGWGLGW ARTYLLALVS
ERIGADLRTT TYEHLLTLPL DYFGGKRTGD LMARIGSETD RINVFLSLHA LDFANDVLMI
VMTAVILVSI NPLLAVVTLV PLPFIAWMIH VVRDRLRTGF EKIDRVWSEV TNVLADTIPG
IRVVKAFAQE RREAERFRVA NAYNLQVNDK LNRTWSLFTP TVSLLTEIGL LVVWGFGIWQ
VARGSITVGV LTAFIAYIGR FYTRLDSMSR IVSVTQKAAA GAKRIFDILD HVSNVPEPAN
PVKIERVQGR IEMSGLGFRY GSRAVIHDLD LTIEPGEMIG LVGHSGSGKS TLVNLICRFY
DVTDGAIKVD GTDIRRFAVA DYRRHVGLVL QEPFLFFGTI AQNIAYGKPD ATRAEVVAAA
RAAHAHDFIL RLPHGYDSLV GERGQGLSGG ERQRISIARA LLIDPRILIL DEATSAVDTE
TEKEIQKALD NLVQGRTTIA IAHRLSTLRK ADRLVVMDRG EVVEVGPHDA LMEKQGAYWR
LYQAQLRQAD EEASEGAVDE RAGAQLPLVM SHAAHPAGDA
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