| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1054 |
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| Symbol | |
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| ID | 7972025 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1154719 |
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| End bp | 1155498 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791650 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002942971 |
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| Protein GI | 239814061 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.508764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCTT CCACAACCGC CAACCCCTTG CGCATTGCAC TCATCACCGG CGGCAGCCGC
GGCCTCGGCC GCAGCGCCGC GCTGGCGCTC GCCGCCGATG GCGTCGACGT GATCCTCACC
TACGTGTCGA ACGACGCCAG CGCGCAGGCG GTGGTGGCGC AGATCGAGGC GAAGGGGCGC
CGCGCAGTCG CACTCAAGCT GGACGTCGGG GACAGCACGA CCTTCGCCGC ATTCGCGGAT
TCGGTGAAGG CGGCGCTGGC TGCCACCTGG CAGCGCGAGC GCTTCGACTT CCTGGTGAAC
AACGCCGGCG TGGGCCTGCA CGCGAACTTC GAGGACACGA CGGAAGCCCA GTTCGACATG
CTCTTCAACG TGCACTTGAA GGGCCCGTAC TTCCTCACGC AGAAGCTGCT GCCGCTCATC
AACGACGGCG GACGCATCGT CAACGTGTCG TCGGGGCTCA CCCGGTTCTC GATCGCCGGT
GCATCCGCCT ATGCCGCGAT GAAGGGCGGC GTGGAAACGC TCACACGCTA CCTCGCGAAG
GAACTCGGCG CGCGCGGCAT TGCAGCCAAC ACGATCGCGC CGGGGGCGAT CGAAACCGAC
TTCAGTGGAG GCATGGTGCG CGACAACCCG CAGGTGAACG CGATGGTGGC CGGTTTCACC
GCGCTCGGAC GCGCGGGCCA GCCCGACGAT ATCGGCGGAG TGATCGCGCT CTTGCTGGGG
GAGGGCAGCC GCTGGGTGAA CGCCCAGCGC ATCGAAGCAT CCGGAGGGAT GCTGGTCTGA
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| Protein sequence | MTASTTANPL RIALITGGSR GLGRSAALAL AADGVDVILT YVSNDASAQA VVAQIEAKGR
RAVALKLDVG DSTTFAAFAD SVKAALAATW QRERFDFLVN NAGVGLHANF EDTTEAQFDM
LFNVHLKGPY FLTQKLLPLI NDGGRIVNVS SGLTRFSIAG ASAYAAMKGG VETLTRYLAK
ELGARGIAAN TIAPGAIETD FSGGMVRDNP QVNAMVAGFT ALGRAGQPDD IGGVIALLLG
EGSRWVNAQR IEASGGMLV
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