| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1053 |
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| Symbol | |
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| ID | 7972024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1153546 |
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| End bp | 1154598 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791649 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002942970 |
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| Protein GI | 239814060 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.969066 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCG ATGAATTGCG CATCTTCTCG AGGGTGGCCG AGCTCGCGAG CTTCAGCCGT
GCCGCGGACC AGCTCGGGCT GACCCGCGCG CGCGTTTCGG TGGCCGTGCA GCAGCTCGAG
GAGCGGCTGG GCACGCGGCT GCTGCAGCGC ACCACGCGCA GCGTGCGGCT CACCGAGGAC
GGGGCGCGCT TCCTCGACCG CTGCAAGGAC TACCTGGCGG AGGGCGAGCA GCTCGCCACC
ATGTTCCGTT CGCACGCCGG CGGCCTCACG GGGCGGCTGC GCGTCGACCT GCCGAACGCC
ATTGCGCGCG ACCTCGTCAT TCCGCGCCTG CCCGAATTCC TCGCGCGGCA TCCCGCGCTC
GAAGTCGGCA TCAGCACCTC GGACCGCCGT GTCGACCTGG TGCACGAAGG CTTCGACTGC
GTGCTGCGCG TGGGCATGCT CGGGGATTCG GAACTCGTCG CGCGGCCCCT CGGTGCCCTG
CGCATGGCCA ATGCGGCAAG CCCCGGCTAC CTGCGCGCGC ACGGCACGCC CCGCACGCTC
GACGACCTGG CGCAGCACCA GGTCGTTCAT TTCGCGCAGA CGCTCTCCTC CAGCGACGCA
GGCTGGGAGT ACCTCGACCC CGCCGATGGC GTGTACAGGA CATGGCCCGT GGCGGCGACC
GTCACGGTGA ACGGCACCGA CGCCTACCAG GCGGCCGCGC GGGCCGGCCT GGGCCTGATC
CAGGCGCCGT TCGCGGGCCT GGAAGCGAGC CTGGCCGCGG GCGCGCTGGT GCAGGTGATG
CCGGAGTTCA GCGCGCGCCC GATGCCGGTT TCGCTGCTCT ATGCCAATCG GCGCCAGCTC
GCACCGCGCG TGCTGGCCGT GATGGACTGG CTGACCGAGA TCGTCGCGCC CTACTTCGTC
AAGGGGCGCG GCGCCACTGT CAACCCCCCC AGCGCAGCAC CATCGGGTCG AGCCGCTTCG
CCGTCTCGAT CAGGCCGGCG CGCGTCTCGG GGTGCATCGC CGGCAGCGGA TGGCGCGGCG
CCTCGCAAGC GATCACGCCG CCCTCCTTCA TGA
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| Protein sequence | MNTDELRIFS RVAELASFSR AADQLGLTRA RVSVAVQQLE ERLGTRLLQR TTRSVRLTED
GARFLDRCKD YLAEGEQLAT MFRSHAGGLT GRLRVDLPNA IARDLVIPRL PEFLARHPAL
EVGISTSDRR VDLVHEGFDC VLRVGMLGDS ELVARPLGAL RMANAASPGY LRAHGTPRTL
DDLAQHQVVH FAQTLSSSDA GWEYLDPADG VYRTWPVAAT VTVNGTDAYQ AAARAGLGLI
QAPFAGLEAS LAAGALVQVM PEFSARPMPV SLLYANRRQL APRVLAVMDW LTEIVAPYFV
KGRGATVNPP SAAPSGRAAS PSRSGRRASR GASPAADGAA PRKRSRRPPS
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