| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1051 |
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| Symbol | |
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| ID | 7972022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1151004 |
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| End bp | 1152755 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791647 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002942968 |
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| Protein GI | 239814058 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGGACC AAACCCCCAA GAAGAAGCTG CGCTCGACCG AATGGTTCGG CTCGGCCGAC
AAGAACGGCT TCATGTACCG CAGCTGGATG AAGAACCAGG GCATACCGGA CCACGAGTTC
GACGGCCGGC CGATCATCGG CATCTGCAAC ACCTGGTCGG AGCTCACGCC CTGCAATGCG
CACTTCCGCA AGATCGCCGA GCATGTGAAG CGCGGCATCT CGGAGGCGGG CGGCTTCCCG
GTCGAGTTTC CGGTGTTCTC CAACGGCGAA TCGAACCTGC GGCCCACCGC CATGCTCACG
CGCAACCTTG CGAGCATGGA TGTCGAAGAG GCGATCCGCG GCAACCCGGT CGATGCGGTG
GTGCTGCTCA CGGGCTGCGA CAAGACCACG CCCGCATTGC TGATGGGCGC GGCCAGCTGC
GACATCCCCG CCATCGTGGT CACGGGCGGG CCCATGCTCA ACGGCAAGCT CGACGGCAAG
GACATCGGCT CGGGCACGGC CGTGTGGCAG CTGCACGAGT CGCTCAAGGC CGGCGAGATC
AACCTGCACC AGTTCCTCTC GGCCGAAGGC GGCATGTCGC GTTCGGCCGG CACTTGCAAC
ACCATGGGCA CGGCCTCGAC CATGGCCTGC ATGGCCGAGG CGCTGGGCAC CTCGCTGCCG
CACAACGCGG CCATTCCGGC GGTCGACGCG CGGCGCTACG TGCTCGCGCA GATGTCGGGC
ATGCGCGCGG TCGAGATGGC GAAGGAGGGG CTCACGCTGT CGAAGATCCT CACGCGCGAG
GCCTTCGAGA ATGCCATTCG CGTCAATGCC GCCATCGGCG GGTCGACCAA TGCGGTGATC
CACCTGAAGG CCATTGCGGG GCGCATCGGC GTCGACCTGG AACTGGAAGA CTGGACGCGC
ATCGGCAGCA ACACGCCGAC CATCGTCGAC CTGTTGCCCT CGGGCCGCTT CCTGATGGAG
GAGTTCTACT ACGCGGGCGG CCTGCCCGCG GTGCTGCGGC GCCTGGGCGA GAACGGTCTC
TTGCCGCACC CCGGCGCGCT CACCGTCAAC GGCCAGTCGA TCTGGGACAA CGTGCGCGAG
GCGCCGAGCC TCAACGACGA GGTGATCCGC CCGCTCGACA AGCCGCTGAT CGCCGACGGC
GGCATCCGCA TCCTGCGCGG CAATTTGTCG CCGCGCGGCG CGGTGCTCAA GCCCTCGGCC
GCATCGCCCG AACTGCTCAA GCACCGCGGC CGCGCGGTGG TGTTCGAGAA CCTGGAACAC
TACAAGGAGC GCATCGTCGA CGAGAGCCTC GAGATCGACG CCAGCTCGGT GATGGTGATG
AAGAACTGCG GCCCCAAGGG CTACCCCGGC ATGGCCGAGG TCGGCAACAT GGGCTTGCCG
CCCAAGCTGC TGCGCCAGGG CGTGAAGGAC ATGGTGCGCA TCTCGGATGC ACGCATGAGC
GGCACGGCCT ACGGCACGGT GGTGCTGCAC GTCGCGCCCG AGGCGGCCGA CGGCGGACCG
CTTGCGGCGG TGCGCGACGG CGACTGGATC GAGCTCGACT GCGATGCGGG CCGCCTGCAC
CTGGACATCA GCGACGAAGA GCTGGCCGCG CGCCTGGCGT CGCTCACCAG CACCGACGCG
CAGCCCATGA GCACGCGCGG CGGCGGCTAC CAGAAGCTCT ACGTCAACCA CGTGCTGCAG
GCCGACGAAG GCTGCGACTT CGATTTTCTG GTGGGCTGCA GAGGCTCCGC CGTTCCCCGC
CATTCACACT GA
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| Protein sequence | MPDQTPKKKL RSTEWFGSAD KNGFMYRSWM KNQGIPDHEF DGRPIIGICN TWSELTPCNA
HFRKIAEHVK RGISEAGGFP VEFPVFSNGE SNLRPTAMLT RNLASMDVEE AIRGNPVDAV
VLLTGCDKTT PALLMGAASC DIPAIVVTGG PMLNGKLDGK DIGSGTAVWQ LHESLKAGEI
NLHQFLSAEG GMSRSAGTCN TMGTASTMAC MAEALGTSLP HNAAIPAVDA RRYVLAQMSG
MRAVEMAKEG LTLSKILTRE AFENAIRVNA AIGGSTNAVI HLKAIAGRIG VDLELEDWTR
IGSNTPTIVD LLPSGRFLME EFYYAGGLPA VLRRLGENGL LPHPGALTVN GQSIWDNVRE
APSLNDEVIR PLDKPLIADG GIRILRGNLS PRGAVLKPSA ASPELLKHRG RAVVFENLEH
YKERIVDESL EIDASSVMVM KNCGPKGYPG MAEVGNMGLP PKLLRQGVKD MVRISDARMS
GTAYGTVVLH VAPEAADGGP LAAVRDGDWI ELDCDAGRLH LDISDEELAA RLASLTSTDA
QPMSTRGGGY QKLYVNHVLQ ADEGCDFDFL VGCRGSAVPR HSH
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