| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1050 |
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| Symbol | |
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| ID | 7972021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1149935 |
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| End bp | 1150963 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791646 |
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| Product | inner membrane ABC transporter permease protein YjfF |
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| Protein accession | YP_002942967 |
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| Protein GI | 239814057 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGG TGATCGAAGC GGCACCCTCA CCCCAGCCCT CTCCCGCGAG CGGGAGAGGG
GGCAGGGCAG GGTTCAATCC CAAGTATTTG CCGCTGGCCG CAACCATCTC GCTCTTCGTG
CTGGTGGCCA CGCTGGGCTC GGTGTTCTAC GACGGCTTCT TCTCGGCGCA GGTGTTCCTC
AACCTGCTGA TCGACAACGC CTTCCTGATC GTCGTGGCCG TGGGCATGAC CTTCGTGATT
CTTTCGGGCG GCATCGACCT GTCGGTGGGC TCGGTGATCG CGCTCACCAC GATGGTGTCG
GCCTCGCTGG TCGAGAAGCA CGGCTGGAGC CCTGCGGTGG TCATTCCGCT GGTGCTGGCC
ATGGGCACCG CGTTCGGCGC GTTCATGGGG CTGCTCATCG AGCGCTTCAG GCTGCAGCCT
TTCATCGTCA CGCTCGCGGG CATGTTCCTC GCGCGGGGCC TGTGCTACCT GATCAGCATC
GATTCCATCA GCATCACCAA CGCCTTCTAT GCCGAGGTCT CGCAGATCCG CATTCCGGTC
TGGGGCGAGG CCTCGCTGTC GATCAGCGCG GTGATCGCCA TCGGCGTGCT GCTGGCGGCC
GTGTTCATTG CGCACTGCAC GCCCTTCGGC CGCGCGGTGT ACGCCATTGG CGGCAGCGAG
CAGTCGGCCC TGCTGATGGG CCTGCCGGTG CGCTCCACCA TCATCGGCGT CTACACGCTC
TCGGGCTTCT GCTCGGCGCT CGCGGGCGTG ATCTTCACCT TCTACATGCT CTCGGGCTAC
GGCCTGCATG CGCTGGGGCT GGAGCTCGAT GCGATTGCGG CGGTGGTGAT CGGCGGCACG
CTGCTCACGG GCGGCGTGGG CTATGTGGCG GGCACGCTGT TCGGCGTGCT GATGCTCGGG
ATCATCCAGA CGCTGATCTC CTTCGACGGC ACGCTGAGCT CGTGGTGGAC GCGCATCGTG
GTGGGTGCGC TGCTCTTCGT GTTCTGCCTG CTGCAGCGCT TCTTCACTTC GCGTGCGCCA
CGGCGTTGA
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| Protein sequence | MSAVIEAAPS PQPSPASGRG GRAGFNPKYL PLAATISLFV LVATLGSVFY DGFFSAQVFL
NLLIDNAFLI VVAVGMTFVI LSGGIDLSVG SVIALTTMVS ASLVEKHGWS PAVVIPLVLA
MGTAFGAFMG LLIERFRLQP FIVTLAGMFL ARGLCYLISI DSISITNAFY AEVSQIRIPV
WGEASLSISA VIAIGVLLAA VFIAHCTPFG RAVYAIGGSE QSALLMGLPV RSTIIGVYTL
SGFCSALAGV IFTFYMLSGY GLHALGLELD AIAAVVIGGT LLTGGVGYVA GTLFGVLMLG
IIQTLISFDG TLSSWWTRIV VGALLFVFCL LQRFFTSRAP RR
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