| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1049 |
|---|
| Symbol | |
|---|
| ID | 7972020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1148904 |
|---|
| End bp | 1149938 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644791645 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002942966 |
|---|
| Protein GI | 239814056 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCC TCTCCTCCTT CATGAGCCAT CGCCTCGCCT GGCCCATCGT CACGCTGCTT
CTGCTGCTCG CGGTCAACAC CGCGTTCAAT GCCAGCTTCC TGCACCTCGA ATGGCGCGAC
GGCCACCTGT ACGGCAGCCT GGTCGACATC CTCAACCGCG CGGCGCCGCT GGTGCTGGTG
TCGCTGGGCA TGACGCTGGT GATTGCCACG CGCGGCATCG ACATCTCGGT GGGCGCGGTG
GTGGCCATTG CGGCGGCCGT CGCGGCCTGG ATGATCGGCG GCTCGGTGGC GAGCGACGTG
AGCCGGTTCC CGATGCCGCT CGCGATCCTC GCGGCCCTGG GCGTTGCACT GCTCTGCGGC
CTCTGGAACG GAATGCTGGT GGCCAAGGTC GGCATGCAGC CGATCATCGC CACGCTGATC
CTCATGGTGG CGGGCCGCGG CGTCGCGCAG CTCATCGCCG ACGGTCAGAT CATCACCATC
TACTACAAGC CCTTCTTCTT CCTCGGCAGC GGCTACCTGC TGGGCCTGCC GTTCTCGCTG
TTCATCGTGG CCGCGGTGTT CGTGCTGCTC TACCTCGCCA TCACGCGCAC GGCGCTCGGA
CTCTTCATCC AGGCGGTGGG CATCAACCCG ACGGCCGCGC GCGTGGCCGG CGTGCAGGCG
CGCAGGCTCG TCGTGGGCGC CTATGCGTTC TGCGGGCTGT GCGCGGGCGT GGCGGGCCTT
TTGATCAGCT CCAACGTCAA GAGCGCAGAC GGCAACAACG CCGGCCAGCT GCTGGAGCTC
GACGCGATCC TGGCCGTGAC CCTGGGCGGC ACCGCGCTCA CGGGCGGCCG CTTCAGCCTC
ATGGGCAGCG TGATCGGTGC GCTCATCATC CAGACGCTGA CCTATGCGAT CTATTCGCTG
GGCGTGCCGC CGGAGATCAA CCTCGTCGTG AAGGCGGTGG TGGTGTTCGC GGTGATGTTG
CTGCAGTCGC CTGAATTCAG GTCGGAGGTT CGCGCGCTGG TGCAGCGGCC GGTGCATGAG
GGGGAACGGG CATGA
|
|---|
| Protein sequence | MTRLSSFMSH RLAWPIVTLL LLLAVNTAFN ASFLHLEWRD GHLYGSLVDI LNRAAPLVLV
SLGMTLVIAT RGIDISVGAV VAIAAAVAAW MIGGSVASDV SRFPMPLAIL AALGVALLCG
LWNGMLVAKV GMQPIIATLI LMVAGRGVAQ LIADGQIITI YYKPFFFLGS GYLLGLPFSL
FIVAAVFVLL YLAITRTALG LFIQAVGINP TAARVAGVQA RRLVVGAYAF CGLCAGVAGL
LISSNVKSAD GNNAGQLLEL DAILAVTLGG TALTGGRFSL MGSVIGALII QTLTYAIYSL
GVPPEINLVV KAVVVFAVML LQSPEFRSEV RALVQRPVHE GERA
|
|---|
| |