Gene Vapar_1046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1046 
Symbol 
ID7972017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1144463 
End bp1146028 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content64% 
IMG OID644791642 
ProductABC transporter related 
Protein accessionYP_002942963 
Protein GI239814053 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGCAG CAGCAGCGGA CAGCCGCAGC ATCCTCGAGA TGCGCGGCAT CACCAAGACA 
TTTCCGGGCG TGAAGGCGCT CAGCGATGTC AACCTGGCGG TGCGCGCGGG CGAGATCCAC
GCGGTGGTCG GCGAGAACGG CGCGGGCAAG TCGACGCTCA TGAAGGTGCT GAGCGGCGTC
TACCCGTGCG ACTCGTACAC CGGGGAGATC CACTTCGAGG GCGAGCTGCG CCGCTTCCGG
AGCATTGCCG ACAGCGAGAA GCTCGGCATC ATCATCATCC ACCAGGAGCT GGCGCTGGTG
CCGCTGCTGT CCATTGCCGA GAACATCTTC CTTGGCAACG AAATTGCGCG CGGCGGCGTG
ATCGACTGGT TCGCCGCCTA TGCGAAGACG CGCGAGCTGC TTGCCAAGGT GGGTCTCAAG
GAGCCGCCCA CCACGCTCGT GACCGACCTG GGCGTGGGCA AGCAGCAGCT CGTGGAGATT
GCGAAAGCAC TGGCCAAGGA GGTCAAGCTG CTGATCCTCG ACGAGCCCAC GGCCAGCCTC
AACGAGAACG ACAGCGACGC GCTGCTGATG CTGCTGCTGG AACTCAAGCG CCAGGGCATC
GCATCGATCC TGATCTCGCA CAAGCTCAAC GAGATTGCCA AGGTGGCCGA CTCCATCACC
GTGCTGCGCG ATGGCGCCAC GGTGGAGACC ATGGACTGCC GCGGCCAGCC GATCAGCGAG
GACCGCATCA TCCGCGGCAT GGTCGGGCGC GACATGGCGC ACCGCTATCC GCAGCGCGAT
CCGAAGATCG GCGAGACGGT GTTCGAGGTG CGCGACTGGC GCGTGCACCA TGCGCTGCAT
GCCGACCGCG AGCAGATCAA GGGCGTGGAC CTGCATGTGC GCAAGGGCGA GATCGTCGGC
ATCGCGGGCC TCATGGGCGC GGGCCGCACC GAGCTGGCGA TGAGCGTGTT CGGCAAGTCC
TACGGCCAGC GCATCAGCGG CACGGTGCTG ATGCACGGCC AGCCGGTGGA CGTGGGTACG
GTGCGCAAGG CCATCGACCA TGGCATTGCC TACGTCACCG AGGACCGCAA GGGCCTCGGG
CTGGTGCTGG AGGAAAACAT CCAGAAGAAC GTGAGCCTGG CCAACCTGGA GGCGGTCTCC
AGTTCGATGG TGATCGACGA CGCGCGCGAA TTCAAGGTGG CGAGCGACTA CCGCCGTGCA
CTCAACATCC GTTCATCGGG CGTGGAGCAG CTGGTGGTGA ACCTGTCGGG CGGCAACCAG
CAGAAGGTGG TGCTCAGCAA ATGGCTCTTC ACCAAACCCG AACTTTTGAT TCTCGACGAA
CCCACGCGCG GCATCGACGT GGGCGCCAAG TACGAGATCT ACACCATCAT CGACCAGCTC
GCGAGCGAGG GCAAAGGCAT TCTCATGATT TCTTCCGAAC TGCCGGAACT GCTCGGCATG
TGCGACCGCA TCTACGTGAT GAACGAGGGC CGCTTCGTGG CCGAATTTCC GGCCGCCGAG
GCTTCGCAGG AGCGCATCAT GCATGCGATC GTGAGCGCGG GGAGTTCCGT CCATGTCGCA
GCCTGA
 
Protein sequence
MAAAAADSRS ILEMRGITKT FPGVKALSDV NLAVRAGEIH AVVGENGAGK STLMKVLSGV 
YPCDSYTGEI HFEGELRRFR SIADSEKLGI IIIHQELALV PLLSIAENIF LGNEIARGGV
IDWFAAYAKT RELLAKVGLK EPPTTLVTDL GVGKQQLVEI AKALAKEVKL LILDEPTASL
NENDSDALLM LLLELKRQGI ASILISHKLN EIAKVADSIT VLRDGATVET MDCRGQPISE
DRIIRGMVGR DMAHRYPQRD PKIGETVFEV RDWRVHHALH ADREQIKGVD LHVRKGEIVG
IAGLMGAGRT ELAMSVFGKS YGQRISGTVL MHGQPVDVGT VRKAIDHGIA YVTEDRKGLG
LVLEENIQKN VSLANLEAVS SSMVIDDARE FKVASDYRRA LNIRSSGVEQ LVVNLSGGNQ
QKVVLSKWLF TKPELLILDE PTRGIDVGAK YEIYTIIDQL ASEGKGILMI SSELPELLGM
CDRIYVMNEG RFVAEFPAAE ASQERIMHAI VSAGSSVHVA A