Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1046 |
Symbol | |
ID | 7972017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1144463 |
End bp | 1146028 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644791642 |
Product | ABC transporter related |
Protein accession | YP_002942963 |
Protein GI | 239814053 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGCAG CAGCAGCGGA CAGCCGCAGC ATCCTCGAGA TGCGCGGCAT CACCAAGACA TTTCCGGGCG TGAAGGCGCT CAGCGATGTC AACCTGGCGG TGCGCGCGGG CGAGATCCAC GCGGTGGTCG GCGAGAACGG CGCGGGCAAG TCGACGCTCA TGAAGGTGCT GAGCGGCGTC TACCCGTGCG ACTCGTACAC CGGGGAGATC CACTTCGAGG GCGAGCTGCG CCGCTTCCGG AGCATTGCCG ACAGCGAGAA GCTCGGCATC ATCATCATCC ACCAGGAGCT GGCGCTGGTG CCGCTGCTGT CCATTGCCGA GAACATCTTC CTTGGCAACG AAATTGCGCG CGGCGGCGTG ATCGACTGGT TCGCCGCCTA TGCGAAGACG CGCGAGCTGC TTGCCAAGGT GGGTCTCAAG GAGCCGCCCA CCACGCTCGT GACCGACCTG GGCGTGGGCA AGCAGCAGCT CGTGGAGATT GCGAAAGCAC TGGCCAAGGA GGTCAAGCTG CTGATCCTCG ACGAGCCCAC GGCCAGCCTC AACGAGAACG ACAGCGACGC GCTGCTGATG CTGCTGCTGG AACTCAAGCG CCAGGGCATC GCATCGATCC TGATCTCGCA CAAGCTCAAC GAGATTGCCA AGGTGGCCGA CTCCATCACC GTGCTGCGCG ATGGCGCCAC GGTGGAGACC ATGGACTGCC GCGGCCAGCC GATCAGCGAG GACCGCATCA TCCGCGGCAT GGTCGGGCGC GACATGGCGC ACCGCTATCC GCAGCGCGAT CCGAAGATCG GCGAGACGGT GTTCGAGGTG CGCGACTGGC GCGTGCACCA TGCGCTGCAT GCCGACCGCG AGCAGATCAA GGGCGTGGAC CTGCATGTGC GCAAGGGCGA GATCGTCGGC ATCGCGGGCC TCATGGGCGC GGGCCGCACC GAGCTGGCGA TGAGCGTGTT CGGCAAGTCC TACGGCCAGC GCATCAGCGG CACGGTGCTG ATGCACGGCC AGCCGGTGGA CGTGGGTACG GTGCGCAAGG CCATCGACCA TGGCATTGCC TACGTCACCG AGGACCGCAA GGGCCTCGGG CTGGTGCTGG AGGAAAACAT CCAGAAGAAC GTGAGCCTGG CCAACCTGGA GGCGGTCTCC AGTTCGATGG TGATCGACGA CGCGCGCGAA TTCAAGGTGG CGAGCGACTA CCGCCGTGCA CTCAACATCC GTTCATCGGG CGTGGAGCAG CTGGTGGTGA ACCTGTCGGG CGGCAACCAG CAGAAGGTGG TGCTCAGCAA ATGGCTCTTC ACCAAACCCG AACTTTTGAT TCTCGACGAA CCCACGCGCG GCATCGACGT GGGCGCCAAG TACGAGATCT ACACCATCAT CGACCAGCTC GCGAGCGAGG GCAAAGGCAT TCTCATGATT TCTTCCGAAC TGCCGGAACT GCTCGGCATG TGCGACCGCA TCTACGTGAT GAACGAGGGC CGCTTCGTGG CCGAATTTCC GGCCGCCGAG GCTTCGCAGG AGCGCATCAT GCATGCGATC GTGAGCGCGG GGAGTTCCGT CCATGTCGCA GCCTGA
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Protein sequence | MAAAAADSRS ILEMRGITKT FPGVKALSDV NLAVRAGEIH AVVGENGAGK STLMKVLSGV YPCDSYTGEI HFEGELRRFR SIADSEKLGI IIIHQELALV PLLSIAENIF LGNEIARGGV IDWFAAYAKT RELLAKVGLK EPPTTLVTDL GVGKQQLVEI AKALAKEVKL LILDEPTASL NENDSDALLM LLLELKRQGI ASILISHKLN EIAKVADSIT VLRDGATVET MDCRGQPISE DRIIRGMVGR DMAHRYPQRD PKIGETVFEV RDWRVHHALH ADREQIKGVD LHVRKGEIVG IAGLMGAGRT ELAMSVFGKS YGQRISGTVL MHGQPVDVGT VRKAIDHGIA YVTEDRKGLG LVLEENIQKN VSLANLEAVS SSMVIDDARE FKVASDYRRA LNIRSSGVEQ LVVNLSGGNQ QKVVLSKWLF TKPELLILDE PTRGIDVGAK YEIYTIIDQL ASEGKGILMI SSELPELLGM CDRIYVMNEG RFVAEFPAAE ASQERIMHAI VSAGSSVHVA A
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