| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1045 |
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| Symbol | |
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| ID | 7972016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1143384 |
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| End bp | 1144454 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644791641 |
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| Product | sugar ABC transporter, periplasmic sugar-binding protein |
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| Protein accession | YP_002942962 |
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| Protein GI | 239814052 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGCA ACTTCCTCAA GGCCTCGCTC GCAGGCATCG CACTGGCCAT CGCCGGCATC
GCGCCGCTCG CGCATGCACA GGACAAGGGC CCGATCGCCA TCTCGATGCC GACCAAGTCG
TCGGCGCGCT GGATCGCCGA TGGCGCCAAC ATGGTCAAGT ACTTCAAGGA GAAGGGCTAC
AAGACCGACC TGCAGTACGC CGACGACGAC ATCCCCAACC AGCTCGCGCA GATCGAGAAC
ATGGTGACCA AGGGCTCCAA GGTGCTGGTC ATCGCGGCCA TCGACGGCAC CACGCTGTCC
GACGTGCTGC AGAAGGCCGC CGACAAGGGT GTGAAGGTCA TTGCCTACGA CCGGCTCATC
AAGGGCTCGA AGAACGTCGA CTACTACGCC ACCTTCGACA ACTTCCAGGT CGGCGTGCTG
CAGGCGCAGT CGATCGAGTC GGCGCTCGGC CTGAAGAGCG GCAAGGGCCC GTTCAACATC
GAGCTGTTCG GCGGCTCGCC CGACGACAAC AACGCCTTCT TCTTCTACAA CGGCGCGATG
TCGGTGCTGG AGCCGTACAT CAAGAGCGGC AAGCTCGTGG TGCGCAGCAA GCAGATGGGC
ATGGACAAGG TCGGCACGCT GCGCTGGGAC GGCGCGGTGG CGCAGGCGCG CATGGACAAC
CTGCTGTCGG CCTACTACAG CAAGGACCGC GTCGATGCGG TGCTGTCGCC GTACGACGGG
CTGTCGATCG GCATTCTCTC GTCGCTCAAG GGCGTGGGCT ACGGCTCGGC GTCGCAGCCG
ATGCCTGTCG TCTCGGGCCA GGACGCGGAG ATTCCGTCGG TCAAGTCGAT CCTGCGCAAG
GAGCAGACCT CGACCGTGTT CAAGGACACG CGCGAGCTGG CCAAGGTCAC GGTGGCCATG
GTCGACGCCA TGCTCTCGGG CAAGACGCCC GAGGTGAACG ACACCAAGAC CTACAACAAC
GGCATCAAGG TGGTGCCTTC CTACCTGCTC AAGCCCGTGA GCGTGGACGG CGGCAACTGG
AAGCAGGTGC TGGTCGACAG CGGCTACTAC AAGGAAAGCC AGGTCAAGTG A
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| Protein sequence | MKRNFLKASL AGIALAIAGI APLAHAQDKG PIAISMPTKS SARWIADGAN MVKYFKEKGY
KTDLQYADDD IPNQLAQIEN MVTKGSKVLV IAAIDGTTLS DVLQKAADKG VKVIAYDRLI
KGSKNVDYYA TFDNFQVGVL QAQSIESALG LKSGKGPFNI ELFGGSPDDN NAFFFYNGAM
SVLEPYIKSG KLVVRSKQMG MDKVGTLRWD GAVAQARMDN LLSAYYSKDR VDAVLSPYDG
LSIGILSSLK GVGYGSASQP MPVVSGQDAE IPSVKSILRK EQTSTVFKDT RELAKVTVAM
VDAMLSGKTP EVNDTKTYNN GIKVVPSYLL KPVSVDGGNW KQVLVDSGYY KESQVK
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