| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1037 |
|---|
| Symbol | |
|---|
| ID | 7972008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1131030 |
|---|
| End bp | 1135784 |
|---|
| Gene Length | 4755 bp |
|---|
| Protein Length | 1584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791633 |
|---|
| Product | Mur ligase middle domain protein |
|---|
| Protein accession | YP_002942954 |
|---|
| Protein GI | 239814044 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.57988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTGT TGAACCGCGC CAGGCAGATA CTGGCCGCCC CGGACGGCAC GCTGCCCGGC
GCCGCCGCCA CGCCCGAGGC CGGCTGCGTG GTACTGATTG CCATGGGCGA CGGCACGAGC
CGCGCGCGCG TGGTTGCCGG GCGCGCCGAA AGCGCCGAGC AGGCCTGGCA ACAGGCCAGC
GATGCAGCAG TTGCGCTCGC ACAGCGCATC GGCATGCAGC CGCGCCATGT GCGCGTGGAA
CTGGTCGACC AGGTCGAGCC CATGAGCTGG GGCGCGCTGA AGGCCCGCCT GGCGGGCACC
AGGCGCAACT ACTTCAACCA TGGCGTGTCC TTCGACGCGA AGTTCGAGGT GGCGCTGCTC
GCGCCGGAGA TCAACGGCAG CGCCGTCTTC TACAACGGCA CCGTGGACCA TGCCGAGCCC
AATCCGGGCA ACCTGCGCCT TCATGCGAAG CGGCGCTTCG GTGCCGAACT CGATTTTCCG
CAGGATGACG CGGCGCCGGT GTGGTGCTTC ACCACGCGCG CGGCCTATGC CGATACCGAA
GGCGCGTGGC CGATCACTCC CGCGGGCCAG TCGGCGGGCT ACCGCACGCT GCCCGAGTGG
GGCGCCGGCC AGGTGCGCAG CCTCGTGGAC AGCGCGAGCG ACTATCTTGC GGCGCAGGTC
AAGCCCACGG GCGAGTTCCA CTACGGATGG TTCCCCTGCT TCGACCGCGC GATTCCCACC
TACAACACGC TGCGCCACGC GAGCTCGACC TATGCGTTGC TCGAGGCCTG GGAGCTGACC
CGCAGCGACA GCCAGAAGGC GGCCATCGAC CGCTCGCTGT CGCTGCTGAC GAAGCGGCTG
ATCCGCCAGG CCGAGCTGCC GGGCGGCACG CGCGCGGCCT ACCTGCTGGA CGTCGGCGAC
GAGATCAAGC TCGGCGGCAA CGCGGTGTGC CTGCTGGCGC TCGTCAAGTA CACGGAGCTC
ACGGGCGATC CGCAGTACCT GCCGCTGATG GAGCAGCTCG CGCTCGGCAT CCAGGCCATG
CAGGACCCGG CCAGCGGGCG CTTCGTGCAC GTGCTCAACT ACCCCTCGCT CGAAGTGAAG
GACGCCTTCC GCGTCATCTA CTACGACGGC GAAGCCGCCT TCGGCCTGAT GCGCCTGTAC
GGCCTCACGC GCGACGAGCG CTGGCTCGCG GTGGTCGAGA AGGCCTTCGA GCATTTCATT
GCCGCGGAGC ACTGGCGCGC GCACGACCAC TGGCTGAGCT ACTGCGTCAA CGAGCTCACG
CGTGTTCGGC CCGAGACGCG CTACTACCAG TTCGGGTTGC GCAACGTGGC CGACTACCTG
GACTTCGTGC TGGAGCGCAT CACCACCTTT CCGACCCTGC TCGAGCTCAT GATGGCCGCG
CGCGAGATGG TGGAGCGCCT GGCCGCCGAC CCCGCGCTGC GCCCGCTGCT CGAAGGCTTC
GACCGCGCCA AGTTCGACCG CGCGCTCGAG CACCGCGCGC GCTACCTGGC CAACGGCTAC
TTCTGGCCCG AGCTCGCGAT GTTCTTCCGC AACCCGGACC GCATCACCGG TTCGTTCTTC
ATCAAGCACC ACAGCTTCCG CGTGCGCATC GACGACGTGG AGCACTATCT CTCGGGCTAC
GTGGCTTACC ACCGGCTGTT GAAGCACCGC GAAGCATCGG GACTCCCGGC TGCGTGCGGA
ATTCCCCAAG CCACTTCTGC GCCAGCGCCG GCGGACAGTG GCCGCGCGCC CGTCGCGGTC
TGGGGCGGCG ACGTGAACCT CGGCCGCCGG CTGCACTACC GCCTGGCAGA GCTCGGCGGC
CCGCAGGAGA TGCTTGGCGG CATCGCTGCA CTTCGCGAGG CGGACCTGCG CATCGCCAAC
CTCGAATGCG TGGTCGCCAC CACCGGCGAA CAGGGCGTCG AGAAGGATGA GAGCAGCCCC
TACTACTACC GCGCCCGGCC CGAGATGCTC GCGGTGCTGG CCGAAGCGGG CATCGGCATG
GTCGCCACCG CCAACAACCA CAGCGGCGAC TACGGAGCCG CCGCGCTGAT GGAGCAGCAG
GCGCTGCTGG ATGCCGCCGG CATTGCGCAC GCGGGCACCG GGCGCAACCT GGATGAGGCG
CTGCGGCCGG CCATCGGCCG GGCCGGCGGC GTGCGCGTGG CGCTGTTCTC GCTCGACGCC
ACGCAGCCGC GCTTCGCGGC AACGGCCGAT GCTCCGGGTG CCGCCTGGCT GCCGCTCGGC
GATCCCGCCG CCTGGACTGC CACGCTTGCG CCGCGCATTG CCGCCGCGCG TGCCGAGGCC
GATGTGGTGC TGGTGGCCGT GCACTGGGGC GCAAACCTCG AAACCGCGCC TTCGCAGGCC
GAAATCGATG TCGGCCATGC CATCGTCGAT GCCGGTGCCG ACGCAATTCT CGGCAGCTCG
GCCCATGTGC TGCAGGGCAT CGAGATCTAC CGCGGCCGGC CGATCCTGCA CGATGCGGGC
GACCTGTTGT TCGAATCCGT CCGCAACGAC CTCGGGGATT CCGGTGTGTT CTCGCTGGCG
CTGAGTGTGC GCGGTGTCGA AGAGGTGGTG TTCACGCCCA TTGGCGTGGG TTTCGGTTTC
TCGCGGCAGC ACACGGGCGC GCCGGCCGAG GCCGCGAGTG CGCGCTTCGC CGAGCAATGC
CGCGCACTGG GGACCGAAAT GGTGCCGGTG GCGGGAGGCC GGTGCGCGGT GAGGCTGTCG
CCACCCGAGC GGCGGCCCGC CCTCGCCGCC GCAGCGCCCG CCGCGCGCGC GCCTCGCGCC
ATCAGGCCGC TCCTCGCGCC CCGGCCCGAA TGGATGGCCG ATGCGGTGCC GCCCGACGCA
TGGGTGCCGC CTCTCCAGGC CGGGCCGCTG CGCCTGGTGG GCGTGCGTTG CGCGCCGCGC
CAGCTCGTCG GGCGGCGCAT GCTGTGGGTG GAGTCTTTCT GGACCGCCGA CGCGCCCGTA
ACGGCCGACC TGCGCATCCA GTTCCGCGCG GTCCCGCTGC GCAGCACCCG CATGCCCGCG
TGGGGCGAAG GCATGGACCA CGAGCCCTGC GACTGGATGT GGCCGACCAG CCGATGGGAG
CCGGGCCGCA TCTATCGCGA CCGCTACGGG CTGCGCGCGC CTCGCGCCGG CCTGCTGGAG
AGCGATGTGC TGCAGCTCGA GCTGCGCGTA CGCGGCGCGC TGGCTGGGCT GCCGCCCGCG
CGCCGGCTGT CCATCTGGTG CGGCCTGCGC GTGCCCGGTG CGCCGGTGCC ATTGCCCGCG
CGGCCCGCGC CCGTGCCCGC GGCCCTGCAT CCCGGTGCCA GCCCGACCCC GGCGCCGGTC
TGGACCGCCG AGCATCTGCA GCGCATCACG GGCGGCCGAT GGCTGGTCGA GCCTCCGCCA
GGCTGGTTCG TGAACTCGGT GGTGCGCGGG CCGCGCCATC TGCCGCTGCT GCCGCCGCCT
GCGCTTTTCG TCGCGGCCGA CTACGACACG CTGGCCGCGC ACGAGAACTA CAGCAAGCGC
CTGCCCGGCA ATCCGGACCG CCACGCCGAC CTGCCGTCGC TCGAAAAAAA GCTGGCAGGC
GCGGTGGTCG CGCATGCGGT GGAAGGACTG GCTCCCGACT TTCCGCTGCT GCAGCTGGAC
GATCCGATCC GCGGAATGAT CGCGCTCGGC GAGGCGGCGC GCGCGCGTTT CAAGGGCTTG
GTGGTGGGGG TGACCGGCAC GGTCGGCAAG TCGTCCACCA TTGCCATGCT GCGCGACCTG
CTGCCCGAAG CCGCGCGCGT GCACACCACC GTGGACAACT ACAACTCGCG CGTCGGCGTG
CCGGCCATGC TGGCCAATCT CGGGCCCGAT GCGGACGTGT GCATTCTCGA AATGGCGCAG
AGCGGCCTGT GGATGGACCG GGGGCCGATC TCGCTGATGG CGCGGCCGCA CGTGGCCATC
ATCACCGAGG TCGGGCTGTC GCAGACCCGC CAGGCCTCGA CCCTCGAACA GACGGCGGCC
TTCAAGTCGC GCATCTTCCT GGGGCTGGAG CCTGGCGGCG TCGCGATCGT GCCCGACCAC
ATTCCCTGCC TCGCGCAGGT GGTGCGCGCC GCCGCACTCA CGGCGGGCGC CATCTGGGTG
GTGGGGCCCG GGCCGGACGC CAACATCCGC GTGCTCGACA CGCACCCCGA GCCCGGCGGC
GGCTGCCGCG TGCGCATTGC GACGGAGGGC CGCAGCTTCG AGTACCTGTT TCCCATCGCG
AGTGCCGGGC TGGTGCGCAA CTCGGCCCTG GCGTTTGCCG CGCTGCTGGC GATGGGCTTC
GATGCGGATG CCGCCTGCGC GCGCATGCCC GGGGTGCGGC TTCCCGCGTC GGTGATGCAG
GTGCGCACGC TGCGCACCCG GGCCGGCATC GAGGCCACGC TGATCGACGA CAGCTGGAAC
GCCGAGGTCA TGTCGATGCG CAACGCGATG GAGTTCGTGC GCACCTACCG GCGTGCGGAC
GATGCGCCGG TGCAGCGCAA GATCGGCGTG CTCGGGCGCA TCGTGAACCT CGGGCGCGAT
TCGCAAGCCC TGCACCGCGG CCTTGCCGAA CCGCTGCTGG CCTCCGGCAT CGAGCACCTG
GTGACGCACG GCGCAGAGAT GCGCTGGCTG CGCGAGGATG TACCGGCCGG GCTGCTCGGA
CCGCACTTCG ACGATGCCGA GAAACTCGCG GACTACCTCG GCACCTTCCT GCGCGACGGC
GACCTGGTGC TGCTGAAGGG CGACCGCGTC GGTTCCGACT TCGGCACCAT CCCCCAAAGG
CTGCAGCAGC TGTGA
|
|---|
| Protein sequence | MDLLNRARQI LAAPDGTLPG AAATPEAGCV VLIAMGDGTS RARVVAGRAE SAEQAWQQAS
DAAVALAQRI GMQPRHVRVE LVDQVEPMSW GALKARLAGT RRNYFNHGVS FDAKFEVALL
APEINGSAVF YNGTVDHAEP NPGNLRLHAK RRFGAELDFP QDDAAPVWCF TTRAAYADTE
GAWPITPAGQ SAGYRTLPEW GAGQVRSLVD SASDYLAAQV KPTGEFHYGW FPCFDRAIPT
YNTLRHASST YALLEAWELT RSDSQKAAID RSLSLLTKRL IRQAELPGGT RAAYLLDVGD
EIKLGGNAVC LLALVKYTEL TGDPQYLPLM EQLALGIQAM QDPASGRFVH VLNYPSLEVK
DAFRVIYYDG EAAFGLMRLY GLTRDERWLA VVEKAFEHFI AAEHWRAHDH WLSYCVNELT
RVRPETRYYQ FGLRNVADYL DFVLERITTF PTLLELMMAA REMVERLAAD PALRPLLEGF
DRAKFDRALE HRARYLANGY FWPELAMFFR NPDRITGSFF IKHHSFRVRI DDVEHYLSGY
VAYHRLLKHR EASGLPAACG IPQATSAPAP ADSGRAPVAV WGGDVNLGRR LHYRLAELGG
PQEMLGGIAA LREADLRIAN LECVVATTGE QGVEKDESSP YYYRARPEML AVLAEAGIGM
VATANNHSGD YGAAALMEQQ ALLDAAGIAH AGTGRNLDEA LRPAIGRAGG VRVALFSLDA
TQPRFAATAD APGAAWLPLG DPAAWTATLA PRIAAARAEA DVVLVAVHWG ANLETAPSQA
EIDVGHAIVD AGADAILGSS AHVLQGIEIY RGRPILHDAG DLLFESVRND LGDSGVFSLA
LSVRGVEEVV FTPIGVGFGF SRQHTGAPAE AASARFAEQC RALGTEMVPV AGGRCAVRLS
PPERRPALAA AAPAARAPRA IRPLLAPRPE WMADAVPPDA WVPPLQAGPL RLVGVRCAPR
QLVGRRMLWV ESFWTADAPV TADLRIQFRA VPLRSTRMPA WGEGMDHEPC DWMWPTSRWE
PGRIYRDRYG LRAPRAGLLE SDVLQLELRV RGALAGLPPA RRLSIWCGLR VPGAPVPLPA
RPAPVPAALH PGASPTPAPV WTAEHLQRIT GGRWLVEPPP GWFVNSVVRG PRHLPLLPPP
ALFVAADYDT LAAHENYSKR LPGNPDRHAD LPSLEKKLAG AVVAHAVEGL APDFPLLQLD
DPIRGMIALG EAARARFKGL VVGVTGTVGK SSTIAMLRDL LPEAARVHTT VDNYNSRVGV
PAMLANLGPD ADVCILEMAQ SGLWMDRGPI SLMARPHVAI ITEVGLSQTR QASTLEQTAA
FKSRIFLGLE PGGVAIVPDH IPCLAQVVRA AALTAGAIWV VGPGPDANIR VLDTHPEPGG
GCRVRIATEG RSFEYLFPIA SAGLVRNSAL AFAALLAMGF DADAACARMP GVRLPASVMQ
VRTLRTRAGI EATLIDDSWN AEVMSMRNAM EFVRTYRRAD DAPVQRKIGV LGRIVNLGRD
SQALHRGLAE PLLASGIEHL VTHGAEMRWL REDVPAGLLG PHFDDAEKLA DYLGTFLRDG
DLVLLKGDRV GSDFGTIPQR LQQL
|
|---|
| |