| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1036 |
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| Symbol | |
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| ID | 7972007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1130065 |
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| End bp | 1130940 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791632 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002942953 |
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| Protein GI | 239814043 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.391737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGCTCT ACCAATTGAA GACCTTCGTC GCCATTGCGA AGGAGGGCAG TCTCACCCGC
GCGGCCGAGC GCGTGTTCAC CAGCGCGCCG GCTGTCAGCG CCCAGCTCAA GGCGCTGGAG
GACGAACTGG GCGTGAAGCT GTTCGAGCGC ACGCCGCGCG GCATGGTGCC CACGCAGGCC
GGCCGCAGCC TGCTCGAGGA GGCCGAGCGC ACGCTGGCCT CGGCCATGCG CATGCGCTCG
GCCGCCGAGC AGCTGCGCGG CGCGGCGCAG GGCGTGGTGC GCTTCGGCAC CGTGGTCGAC
CCGGTGGCGC TCAGGCTCGG CGAGGTGCTG GTGAAGCTTG CCGAGCGCCA CCCGCAGGTC
ACGCTGCAGC TGCGGCAAGG CCTGTCCTTC GAGACGCTGG CGGCGGTGCA GCGCGGCGAG
CTCGACTGCG CCTACGCGCT CAGCGACAGC GAGCAGGTCG AAGGCATGGA GCTGCTGCGC
CTCGTGCCGG TCGAGCTGGT CGTGACGCTG CCGCTGCCGG TTTCCGAGGC CCACCCCGGC
CTCACGCTCG ACGAGCTCAC CCGCCTGCCG TGGGTGGGAA CGCCGCCCTC GTGCATCCTG
CGCACGCACC TCGAGAAGCT CTTCGCGGGC GCCGGCCGCG ACTACCGGCA AGGGCGCACG
GCCGACAGCG AGAGCGCGGT GCGCAGCATG GTCGCGAGTG GCATGGGCGC CGGCCTGCTG
CGGCTCGACC AGGCCGAGCA GGGCCAGCGC AACGGCGAGC TCGCGATCTG GAACGGCTGG
CGCTCGCGCA CCTGGCTTTG CTGGCTCGCG GCCGAAGGCC GGCATGCGAG CGCCGTCGAG
GCGGTGCGCA GCGCGGTGCT CGAAACCTGG ACCTGA
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| Protein sequence | MELYQLKTFV AIAKEGSLTR AAERVFTSAP AVSAQLKALE DELGVKLFER TPRGMVPTQA
GRSLLEEAER TLASAMRMRS AAEQLRGAAQ GVVRFGTVVD PVALRLGEVL VKLAERHPQV
TLQLRQGLSF ETLAAVQRGE LDCAYALSDS EQVEGMELLR LVPVELVVTL PLPVSEAHPG
LTLDELTRLP WVGTPPSCIL RTHLEKLFAG AGRDYRQGRT ADSESAVRSM VASGMGAGLL
RLDQAEQGQR NGELAIWNGW RSRTWLCWLA AEGRHASAVE AVRSAVLETW T
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