| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1027 |
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| Symbol | |
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| ID | 7971998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1120768 |
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| End bp | 1121832 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791623 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_002942944 |
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| Protein GI | 239814034 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACGT ACAAGATCGC AACCATTCCC GGAGACGGCA TCGGCAAGGA AGTCGTGCCC
GCGGGCCAGC AGGTGCTCGA AGCGCTGGCT TCGGCCGGCA GCAGCTTCAC GTTCGAGTTC
GAGAATTTCG GCTGGGGCGG CGACCACTAC CGCGAACACG GCGCGATGAT GCCGGCCGAC
GGCCTCGATG CGCTGCGCGG CAAGGACGCG ATCCTGTTCG GCTCGGCGGG CGATCCGCAT
ATTCCCGACC ACATCACGCT CTGGGGCCTG CGCCTGAAGA TCTGCCAGGG CTTCGACCAG
TACGCCAACG TGCGCCCGAC GCGCATCCTG CCCGGCATCG ACGGCCCGCT CAAGCGCTGC
GGCCCCCATG ATCTGAACTG GGTCATCGTG CGCGAGAACT CCGAGGGCGA GTACGCCGGC
GTCGGCGGCC GCGTGCACCA GGGCCATCCG ATCGAGGCCG CCACCGACGT GTCCATGATG
ACGCGCGCCG GCGTCGAACG CATCATGCGC TTCGCCTTCA AACTGGCGCA GTCGCGGCCC
CGCAAGCTGC TCACGGTCGT CACCAAGAGC AACGCCCAGC GCCACGCGAT GGTGATGTGG
GACGAGATCG CGCTGCAGGT CTCGAAGGAG TTCCCGGAGG TCACCTGGGA CAAGGAACTG
GTCGACGCAT CGACCGCACG CATGATCAAC CGGCCGGCCT CGCTCGACAC CATCGTCGCC
ACCAACCTGC ATGCCGACAT CCTGAGCGAC CTGGCCGCCG CGCTCGCGGG CAGCCTGGGC
ATCGCACCCA CCGGCAACAT CGACCCCGAG CGGCGCTACC CGTCGATGTT CGAACCGATC
CACGGCTCCG CCTTCGACAT CATGGGCAAG GGCCTGGCCA ATCCGGTCGG CACCTTCTGG
TCGGTCGTGA TGATGCTGGA GCACCTGGGC GAGGCCGAGG CCGCCCGGCG CGTCATGCAG
GCGGTCGAAG CCGTGACGGC CGACCCCGCG CTGCACACGC GCGATCTCGG CGGCCGCGCC
ACCACCGCGC AGGTCACGCA GGCCGTGTGC GCACGGCTCG CGTAA
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| Protein sequence | MKTYKIATIP GDGIGKEVVP AGQQVLEALA SAGSSFTFEF ENFGWGGDHY REHGAMMPAD
GLDALRGKDA ILFGSAGDPH IPDHITLWGL RLKICQGFDQ YANVRPTRIL PGIDGPLKRC
GPHDLNWVIV RENSEGEYAG VGGRVHQGHP IEAATDVSMM TRAGVERIMR FAFKLAQSRP
RKLLTVVTKS NAQRHAMVMW DEIALQVSKE FPEVTWDKEL VDASTARMIN RPASLDTIVA
TNLHADILSD LAAALAGSLG IAPTGNIDPE RRYPSMFEPI HGSAFDIMGK GLANPVGTFW
SVVMMLEHLG EAEAARRVMQ AVEAVTADPA LHTRDLGGRA TTAQVTQAVC ARLA
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