Gene Vapar_1023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1023 
Symbol 
ID7971994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1116962 
End bp1117891 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content68% 
IMG OID644791619 
Productcobalamin (vitamin B12) biosynthesis CbiX protein 
Protein accessionYP_002942940 
Protein GI239814030 
COG category[S] Function unknown 
COG ID[COG2138] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.381916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTCCG AAACCATTCT GCTGGTGGGC CACGGCTCGC GCGAAAAATC CGGCAACGAC 
GAGATCGAGG CCTTTGCCGC GCAATGGCGC GAGCGGCAGC CGGGCTGGCG CATCGAGGTC
TGCTTCATCG AGTTCTCCGA GATCACGATG AGCGAGGGCC TGCGCCGCGC GGCCGAGAGC
GCGCGGCGCG TGATCGTGGT GCCGCTCATC CTCAATGCCG CGGGCCACGT GAAGATGGAC
GTGCCGCAGG CCATCGACGG CGCCCGGCTC AAGTACCCGA TGGTGCAGTT CCTCTACGCG
CCGCACCTCA CGGCCTGCGA TCCGATCCTC GCGATCCTCA AGCGCCGCCT CAAGGACGCG
ATGCAGGCGC TCGACATGCC CGACCCGACC ACCACCGGCG TGGTGATCCT GGGCCGGGGT
TCGTCGGACC GCCAGGCCAA TGGCGACATG GCCAAGATGG CGCGCTGGCT GATGGAGGAG
ACCGACCACG AGCTGGTCGA CCTTGCCTTC ACCGGCATCA CCTACCCGCG CCTGGAGAAG
GCCGTGCAGC GCCAGGGCCT GCTGGGCATG AAGCAGGTGG TGGTGCTGCC CTACTACCTG
TTCAACGGCA CGCTGGTCGA ACGCATCGCG CGCCAGGTCG AGCACCTGAA GGCGCAGTAC
CCGACGATCC GTTTCGTTTC CACGCGCTAC TTCGGCTTCG AGCCCGAGAT CTTCGCGCTG
CTCGAACAGC GCGTGGACGA CCTGCGGCGC GGCGCGCCGG CCGCGCTCAT GCCTTGCGAC
GGCTGCAAGT TCCGCGACTT TGCGGTGGAG CACGGGCTGG GCGGCCACCA CCATGGCGAT
GCGGCGGCGC ACGGCCACGA CCACGACCAC GATCACGACC ACGCGCATGG CCACGTCCAT
GCGCACGACG CGGTGCCGGC GCTGCGATGA
 
Protein sequence
MNSETILLVG HGSREKSGND EIEAFAAQWR ERQPGWRIEV CFIEFSEITM SEGLRRAAES 
ARRVIVVPLI LNAAGHVKMD VPQAIDGARL KYPMVQFLYA PHLTACDPIL AILKRRLKDA
MQALDMPDPT TTGVVILGRG SSDRQANGDM AKMARWLMEE TDHELVDLAF TGITYPRLEK
AVQRQGLLGM KQVVVLPYYL FNGTLVERIA RQVEHLKAQY PTIRFVSTRY FGFEPEIFAL
LEQRVDDLRR GAPAALMPCD GCKFRDFAVE HGLGGHHHGD AAAHGHDHDH DHDHAHGHVH
AHDAVPALR