Gene Vapar_1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1020 
Symbol 
ID7971991 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1113875 
End bp1115185 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content71% 
IMG OID644791616 
Productprecorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 
Protein accessionYP_002942937 
Protein GI239814027 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2241] Precorrin-6B methylase 1
[COG2242] Precorrin-6B methylase 2 
TIGRFAM ID[TIGR02467] precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
[TIGR02469] precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACGACA GCGAGAACAA CAACATGACC AACAAATGCC GCATCCTCGG CGTGCTGGAC 
GACGGCGATG CGAGCCTCGG GCGCGGCGCG ATGGCCCACC TGCAAAAGGC GCAACTGGTG 
ATCGGCGCCG CGCGCACGCT GGCGCTGTTC GCGCCGCACA TCGCGCCCGG CGCGGTGCAG 
CGCGATCTCA CGGGCGCGCT GTCGCAGGTG CCCGAATGGA TCCGCGCCGC GCAGGCCGAA 
GAGCGCCGCG TGGTCGTGCT GGCCACCGGC GATCCGCTGT GCCATGGCAT TGCGGCCTTC 
CTGGCCGCGC GCCTGTGCAT CGAGGCGATC GAGGTCATTC CGAACGTATC GACGCTGCAG 
CTGGCCTGCG CGCGGCTCGG CCTGCCGTGG CAGGAGATGA AGTTTGCCTC CGTGCATGCG 
AAGGATGCGG GCGACTGGCT CCCCGGCTCG CCGCCCGCGC ACGGCCTCTA TGCGCTGCTG 
CGCGACATCC GCCAGCACGA CCGGCTGGCC GTGCTCACCA GCCCCGACAA CACGCCCGAC 
CGCATCGCGC GCATGCTGGT GGCCGAAGGC CTGGCCGACG ATTTCGAGAT GGCCGTGGCC 
GAGCGCCTGT GCCAGCCCGA GGAGCGCGTG GTCAGCGGCA TGCGCATCAC GGCCGCGGCG 
CAGATGCGCT TTGCCGATCC GAACGTGGTG CTGCTCTGGC GCACGCGGCT GCGCGCGCCG 
CAGGTGCTGT TCGGCTTGCC GGATGCGAGC TTCGAGCAGC GCCATCCCGA GAAGGGCCTG 
ATCACCAAGA ACGAGGTGCG CGCCGTCTCG CTCGCGCGCA TGCAGCTGCG CGCCGACAGC 
GTGGTGTGGG ACATCGGCGC GGGCTCCGGC TCGGTCGGGC TGGAGGCCGC GCGGCTGTGC 
TGGCGCGGCC ATGTCTACGC GATCGAGAAG AACGCGGACG ACAGCGCCAT CGTCGCGCGC 
AACCGCCAGG CCATGGGCAT CAGCAACCAC AGCCTGGTGC ACGGCAAGGC GCCCGAGGGC 
CTGGCGGCCT GGGCCGATCC GGATGCGGTC TTCATCGGCG GCTCCGGCGG CGAGCTGGCA 
GAGCTCATCG CGCTGGTGCT GCGGCGCCTG CGGCCGGGCG GCTGGCTGGT GATGAACTTC 
GTGACCATCG AGAACCTCGC GGCTGCGGTC GAGGCGCTCA AGGCGCAGGG CGCGGCCTGG 
GACGTGCTGC AGCTGCAGGC CTCGCGCAGC AAGCCGATCC TGCACATGCA CCGGCTCGCG 
GCCGAGAACC CGGTGTGGCT GGTCTGTGCG CAAGCAGGCG GTGTGGCATG A
 
Protein sequence
MNDSENNNMT NKCRILGVLD DGDASLGRGA MAHLQKAQLV IGAARTLALF APHIAPGAVQ 
RDLTGALSQV PEWIRAAQAE ERRVVVLATG DPLCHGIAAF LAARLCIEAI EVIPNVSTLQ 
LACARLGLPW QEMKFASVHA KDAGDWLPGS PPAHGLYALL RDIRQHDRLA VLTSPDNTPD 
RIARMLVAEG LADDFEMAVA ERLCQPEERV VSGMRITAAA QMRFADPNVV LLWRTRLRAP 
QVLFGLPDAS FEQRHPEKGL ITKNEVRAVS LARMQLRADS VVWDIGAGSG SVGLEAARLC 
WRGHVYAIEK NADDSAIVAR NRQAMGISNH SLVHGKAPEG LAAWADPDAV FIGGSGGELA 
ELIALVLRRL RPGGWLVMNF VTIENLAAAV EALKAQGAAW DVLQLQASRS KPILHMHRLA 
AENPVWLVCA QAGGVA