| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1011 |
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| Symbol | |
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| ID | 7971982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1107302 |
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| End bp | 1108315 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791607 |
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| Product | Transketolase central region |
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| Protein accession | YP_002942928 |
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| Protein GI | 239814018 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.252862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTCGA TGACCATGAT CCAGGCCCTG CGCTCCGCCA TGGACGTGAT GCTCGAGCGC
GACGACAACG TGATCATCTA TGGCCAGGAC GTGGGCTACT TCGGCGGCGT GTTCCGCTGC
ACCGAAGGCC TGCAGGCCAA GTACGGCCGC TCGCGCGTGT TCGATGCGCC GATCAACGAG
GGCGGCATCG TCGGCTCGGC CATCGGCATG GGCGCCTACG GCCTGCGCCC GGTGGTGGAA
GTGCAGTTTG CCGACTACGT CTATCCGGCC TACGACCAGA TCGTGTCCGA GGCGGCGCGC
CTGCGCTACC GCTCGGCCGG CGACTTCACC GCGCCGATCA CCATCCGCAT GCCCTGCGGC
GGCGGCATCT ACGGCGGCCA GACGCACAGC CAGAGTCCCG AGGCGCTGTT CACGCACGTC
TGCGGGCTGC GCACGGTGAT GCCTTCCAAT CCGCGCGATG CCAAGGGCCT CCTGATCGCC
TCGATCGAGA ACGACGACCC CGTCATCTTC CTGGAGCCCA AGCGGCTGTA CAACGGCCCC
TTCGACGGCC ACCACGAGCG GCCGCTGGTG TCGTGGTCGG CGCATCCGCT CGGCGAGGTG
CCCGAGGGCT ACTACACGGT GCCGCTGGAG TCGGCCACCG TGTTCCGCCC CGGCGCCGAC
CTGACGGTGA TCAGCTACGG CACCATGGTG TTCGTCTCGG AAGCGGCCGC ACGCGAGACC
GGCATCGATG CCGAGATCAT CGACCTGCGC AGCCTGTGGC CGCTGGACCT GGAGACGCTG
GTCGCCTCGG TGAAGAAGAC CGGCCGCTGC GTGATCGTGC ACGAGGCCAC GCGCACCAAC
GGCTTCGGCG CCGAGCTGGT GGCACTGGTG CAGGAGCATT GCTTCCACCA CCTGGAGGCG
CCGATCGAGC GCGTGGCCGG CTGGGACACG CCCTATCCGC ATGCGCAGGA GTGGGCCTAC
TTTCCGGGGC CGGCGCGCGT CGGCGCGGCG ATGCGCCGCG TCATGGAGAA CTGA
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| Protein sequence | MASMTMIQAL RSAMDVMLER DDNVIIYGQD VGYFGGVFRC TEGLQAKYGR SRVFDAPINE
GGIVGSAIGM GAYGLRPVVE VQFADYVYPA YDQIVSEAAR LRYRSAGDFT APITIRMPCG
GGIYGGQTHS QSPEALFTHV CGLRTVMPSN PRDAKGLLIA SIENDDPVIF LEPKRLYNGP
FDGHHERPLV SWSAHPLGEV PEGYYTVPLE SATVFRPGAD LTVISYGTMV FVSEAAARET
GIDAEIIDLR SLWPLDLETL VASVKKTGRC VIVHEATRTN GFGAELVALV QEHCFHHLEA
PIERVAGWDT PYPHAQEWAY FPGPARVGAA MRRVMEN
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