Gene Vapar_1009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1009 
Symbol 
ID7971980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1105676 
End bp1105954 
Gene Length279 bp 
Protein Length92 aa 
Translation table11 
GC content68% 
IMG OID644791605 
ProductExcinuclease ABC C subunit domain protein 
Protein accessionYP_002942926 
Protein GI239814016 
COG category[L] Replication, recombination and repair 
COG ID[COG2827] Predicted endonuclease containing a URI domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.53905 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCGAT CCCTGCCCGA CCCCGATCCC GTGCCCTACT GGCTCTATCT CCTGGAGTGC 
GAAGGCGGCG TGTACTACGC AGGGATCGCG CTCGACGTGG AGCAGCGCTT CTTCCAGCAT
GTGTTCGGAC TCGGCGCCAA GTTCACGCGC GCGCGTCCTC CGCTGCGCGT GCTTGCAGCG
CGCGCCTATC CCGACAAGGG CGCCGCGCTG CGGGCGGAGA TCAGGGTCAA GGCATTGCCC
CGTGCGCGCA AGCTCGCTTT CTTCGACGCC GAGGACTGA
 
Protein sequence
MPRSLPDPDP VPYWLYLLEC EGGVYYAGIA LDVEQRFFQH VFGLGAKFTR ARPPLRVLAA 
RAYPDKGAAL RAEIRVKALP RARKLAFFDA ED