Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1000 |
Symbol | |
ID | 7971971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1098124 |
End bp | 1098609 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644791596 |
Product | transcriptional regulator, AsnC family |
Protein accession | YP_002942917 |
Protein GI | 239814007 |
COG category | [K] Transcription |
COG ID | [COG1522] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACCAT TTTCCCCGGA TGCAATAGAC CTGCGCCTGC TCGACGCGCT CCAGCGCGAT GCCTCGCAGA CCAACCAGCG GCTGGCCGCC GAGGTCGGCA TCTCGCCGCC CACCTGCCTG CGCCGCGTGC AACGCCTGCG GCAGGAGCGG CTGATCGAGC GCCAGGTCGC ACTGCTCTCG CCCGACCGGC TTGCGGCGGT GCTGGGCCAC GGCCTGCAGG CGGTGGTCGA GATTTCGCTG GACCGGCAGG ACGCCGCGGC CCTCGATGCC TTCGAGGCCC GCGTGATCGC CGACGACGCC GTGCAGCAAT GCTGGCGCGT CTCGCCGGGG CCGGACTTCG TGCTGGTGGT GGCGGCGCGC GACATGCCGG ACTACAGCGC CCTGGCGCAG CGCCTGTTCA CGGCCGACGG CAATGTGCGC AACGTCAAGG CCTTCTTCAG CCTGAAGCGC GCGAAGTTCG ATCCCAGGGT GCCGCTCACG CCCTGA
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Protein sequence | MEPFSPDAID LRLLDALQRD ASQTNQRLAA EVGISPPTCL RRVQRLRQER LIERQVALLS PDRLAAVLGH GLQAVVEISL DRQDAAALDA FEARVIADDA VQQCWRVSPG PDFVLVVAAR DMPDYSALAQ RLFTADGNVR NVKAFFSLKR AKFDPRVPLT P
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