Gene Vapar_0989 details

Gene Information

• Locus tag: Vapar_0989
• ID: 7971960
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1088211
• End bp: 1088936
• Gene Length: 726 bp
• Protein Length: 241 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644791585
• Product: OmpW family protein
• Protein accession: YP_002942906
• Protein GI: 239813996
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3047] Outer membrane protein W

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA CAATGCTTGC GCTGACCGCA GTGGGCGCGC TGGCGTCCGG AAGCGCGTGG 
GCGCAGAACG CTGGAGACTG GGTGGTCGGC GCGGGTTGGC TTCATTTTGC GCCGCAGGAC 
TCGAGCAAGC CGCTCACGCT GACGGCGCCG GTGCGCAGCG TGCTGGCGGG GTCGGGCGCA 
TCGATCAGCG ATTCGGACAC GCTGGGCTTG AGCGCGGTCT ATTTCGTCGA CAGCCACTGG 
GCTGTCGAGG GCGTGTTCGG CATTCCGCCG AAGTTCAAGC TCAACGGCAC CGGCACGCTG 
GGCCGCGTGG GCGAGCTGGG CCAAGCGCGC CAGTGGAGCC CCACCATTCT TGGCAAGTAC 
TACTTCAACG AGGGCAACGC GGCCCTCCGC CCGTTCGTGG GCCTGGGCGC GACCTATGTC 
TGGTACAGCG ACATCGAGCT GACGCCGGGG CTGCAGGGCG CGCTGGGCAG CCAGCTGCGC 
CAGCGGCCGC TCTCCACCTC GACCACCGCC AAGCTCGACA GCTCGTTCGC GCCCGTGCTC 
AACGCCGGCG TGGCCTACCA GATCGACAAG CACTGGGGCG TGTCGTTCTC GGTCTCCTAC 
ATTCCGCTGA AGACCAAGGC CAAGCTCACG ACCACCACGA TCACCGGGCT GCCGATCGCC 
ACCAGCGAGG CGAGGCTCAA GCTGAACCCG ATCGTGACCT ACCTCTCTGC GACCTACCGC 
TTCTGA 

 

Protein sequence

MKKTMLALTA VGALASGSAW AQNAGDWVVG AGWLHFAPQD SSKPLTLTAP VRSVLAGSGA 
SISDSDTLGL SAVYFVDSHW AVEGVFGIPP KFKLNGTGTL GRVGELGQAR QWSPTILGKY 
YFNEGNAALR PFVGLGATYV WYSDIELTPG LQGALGSQLR QRPLSTSTTA KLDSSFAPVL 
NAGVAYQIDK HWGVSFSVSY IPLKTKAKLT TTTITGLPIA TSEARLKLNP IVTYLSATYR 
F