| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0985 |
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| Symbol | |
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| ID | 7971956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1082558 |
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| End bp | 1083943 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791581 |
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| Product | alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
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| Protein accession | YP_002942902 |
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| Protein GI | 239813992 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0380] Trehalose-6-phosphate synthase |
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| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCGCC TCGTTGTCGT CTCCAACCGC GTGGCCGATC CGCGCAAGCC CGCCGCGGGC
GGCCTGGCCG TGGCGCTCGG CGAAAGCCTG CAGCAAAGCG GCGGCATGTG GTTCGGCTGG
AGCGGCCAGA TCGTCGAGAA CGGCCCCACG GGCGAAGGCG AGCTGCATAT GCTGCAGGCC
GGCAAGGTCA CGCTCGCCAC CATCGACCTG AGCCGCGAGG ACCACGACAG CTACTACCTG
GGCTACAGCA ACGACGTGCT GTGGCCGGTG TTCCACAACC GCCTCGACCT CGCCCACTTC
GACGCCGGCT TCATCGGCGG CTACCGGCGC GTGAACCAGC TGTTCGCACG CAAGCTCAAG
CCGATGCTGA AGGACGACGA CGTCATCTGG ATCCACGACT ACCACCTGAT GCCGCTCGCC
GCCGAGCTGC GCGCCATGGG CTGCAGGCAG CGCATCGGCT TCTTCCTGCA CATTCCGCTG
CCGCCGCAGA TCATCATCGC AGCCGTTCCG CAGCACGAGT GGCTCATGCG CTCGCTGTTC
GCCTACGACC TGATCGGCTT CCAGGCGCAG CAGGACGTGC AGCATTTCGA GCACTACGTG
CGCAACGAGG CGCATGGCGA ATACCTGGGC GACGAGATGT ACCGCGCCTA CGGCCAGACG
GTGCGCTGCA GCGCCTTTCC GATCGGCATC GACGTGGACG AATTCGCGGC GCTCACGCAT
GCGAAGGAGT CGCGCGACAT GTTCGAGACC ATGAAGCGCG AGTATTCCCA GCGCCGGCTG
CTCTTGGGCA TCGACCGGCT CGACTACTCC AAGGGCATTC CCCAGCGCGT GCGCGCCTTC
CGCGAGCTGC TTGCCAACTA CCCCGAGAAC CGCCGCAGCG CCACGCTGAT CCAGATCGCC
TCGCCCACGC GCGAGACGGT CGATGCCTAT GGCGACATCC GGCGCGAGCT CGAAGCGCTG
TGCGGTGCCA TCAACGGCGA CTACGGCGAG CTCGACTGGA TGCCGGTGCG CTACATCCAC
CGCATGGTGG CGCGCAAGCG TGTGCCGGGG CTGTGCCGCG CGGCCGCGGT CGGGCTGGTG
ACGCCGCTGC GCGACGGCAT GAACCTGGTC GCCAAGGAGT ACATCGCGGC GCAGGACCCG
GCCGACCCGG GCGTGCTGGT GCTGTCGCGC TTTGCCGGCG CGGCCGAGCA GCTGAAGGAA
GCACTGCTGG TGAACCCCTA CGACACGCAC GGCACGGCCG AAACGGTGCA GCAGGCGCTG
CAGATGCCGC TCGAGGAGCG GCGCGAGCGG CACCAGAAGC TGCTGTCGCG CATCCGCGAG
CAGGACATCC ACTGGTGGCG GCGCAGCTTC CTGGAGGCGC TGCGCCACGC CGCAAGCCAG
CGCTAG
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| Protein sequence | MSRLVVVSNR VADPRKPAAG GLAVALGESL QQSGGMWFGW SGQIVENGPT GEGELHMLQA
GKVTLATIDL SREDHDSYYL GYSNDVLWPV FHNRLDLAHF DAGFIGGYRR VNQLFARKLK
PMLKDDDVIW IHDYHLMPLA AELRAMGCRQ RIGFFLHIPL PPQIIIAAVP QHEWLMRSLF
AYDLIGFQAQ QDVQHFEHYV RNEAHGEYLG DEMYRAYGQT VRCSAFPIGI DVDEFAALTH
AKESRDMFET MKREYSQRRL LLGIDRLDYS KGIPQRVRAF RELLANYPEN RRSATLIQIA
SPTRETVDAY GDIRRELEAL CGAINGDYGE LDWMPVRYIH RMVARKRVPG LCRAAAVGLV
TPLRDGMNLV AKEYIAAQDP ADPGVLVLSR FAGAAEQLKE ALLVNPYDTH GTAETVQQAL
QMPLEERRER HQKLLSRIRE QDIHWWRRSF LEALRHAASQ R
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