Gene Vapar_0983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0983 
Symbol 
ID7971954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1080477 
End bp1082030 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content71% 
IMG OID644791579 
Producttranscriptional regulator, GntR family with aminotransferase domain 
Protein accessionYP_002942900 
Protein GI239813990 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATTCGC TACCGCTCTA CCGCCAGCTC TCAGCGCACT ACGTGGACGC GATCCACACC 
GGCTCGCTCA AGCAGGGCGA CAAGCTGCCC TCGCTGCGCA GCCTCATGCG CCTGCACGGC
ATCAGCCTGT CGACTGCGCT GCAGCTGTGC CGCACGATGG AAAGCGACGG CTGGGTCGAG
GCGCGCGACC GCTCGGGCTA CTTCGTGCGC CGGCCGCGGC GCCTTGCCAT TGCGCCGATG
GAGGAGCCCC CGGCCGGCGT GCCGCCCGAC CCGGCGCAGT ACGTGGGCAT CCACGCCAAG
GTGTCGGACT TCGTGGCGCG CCGCCGGCAG CTCCCCGAGA AGCTCAACTT TTCCATCGCG
CGCGGCGCGC CGGAGCTGTA TCCGGCCGAG GCGCTGCGCA ATGCGATGAC GCGCATGCTG
CGCCAGCAGC CCGACATGCT GACGATTGCG GCGCCGCTCA AGGGCCACCG CCAGTTCCGC
GAGGTGCTCG CGCAACGCAG CCTGCGCGTG GGCATGGCGA TCTCGCCGGA AGACATCCTG
GTCACCAACG GCTGCATCGA GGCGCTCAAC CTCGCGCTGC GTGCCGTGGC GCAGCCGGGC
GACACGGTGG CGGTGGAGTC GCCCACTTTC TACGGCCTGC TGCAGGTGCT CGAGAGCCTG
GGCATGCGCG CGCTGGAGAT CCCGACCAGT CCGCAGACCG GCCTCTCGAT CGAAGCGCTG
GAGCTCGCGA TCCGCACCTA CGACAACATC AAGGCCGTGG TGGTGGTGCC GCACCTGCAG
AACCCGCTGG GCAGCGTGAT GCCCGATGCC CACAAGGCGC GGCTCGCGCA GCTGTGCGAG
CGGCACGCGA TTCCGCTGAT CGAGGACGAC ACCTACAGCG AGCTGGTCGA CGCCCCGACG
CCGCCGCGCG CGCTCAAGTC CTGGGATACT GGCGGCAACG TGATCCACTG CGCCTCGCTG
CACAAGATCC TCGCGCCCGG CCTGCGCCTG GGCTGGATCA CGGCCGGGCG CTGGCACGCG
CGGGTGGAGA TGCTCAAGTA CGCGCAGACC CGCAACAACG AAGGCCTCTC GCAAAGCGGG
GCCGGCCTGT TCATGGCCAC CGGCGCCTAC GACCGCCACC TGCGCCATCT GCGCAGCTGC
CTGAAGACGC AGCGCGAGCA GACGGCCGAT GCGATCGCCG GCTACTTTCC GGCCGGCACG
CGCATCAACC TGCCGCCTGG CGGGCTGCAG CTGTGGGTCG AGCTGCCCGA GCGCCTGTCG
TCGTCGCGGG TCTTCGATGC GGCGCTCGCG GAGCGCATCG TGGTGGCGCC CGGCACGCTG
TTCTCCAACT CCTCGCGCTT CGATCACTAC CTGCGCATCA ACTGCGGCTG GCCGTATGGC
GAGGCGGTCG ACACGGGCCT GCGCCGCCTG GGCCAGATCA TCGAGACGCT GATGGGCCGC
GGTGATGCCG GCGCGGCTGC GGCGCCGCTG CCCATGCGGC CGGCATCGCC CCCGGTTCCC
ATCCAGTCGC CCCAGGGGCG CCAGCTTCAG TCGAGCAGTG CCAGGGCGGC GTAG
 
Protein sequence
MDSLPLYRQL SAHYVDAIHT GSLKQGDKLP SLRSLMRLHG ISLSTALQLC RTMESDGWVE 
ARDRSGYFVR RPRRLAIAPM EEPPAGVPPD PAQYVGIHAK VSDFVARRRQ LPEKLNFSIA
RGAPELYPAE ALRNAMTRML RQQPDMLTIA APLKGHRQFR EVLAQRSLRV GMAISPEDIL
VTNGCIEALN LALRAVAQPG DTVAVESPTF YGLLQVLESL GMRALEIPTS PQTGLSIEAL
ELAIRTYDNI KAVVVVPHLQ NPLGSVMPDA HKARLAQLCE RHAIPLIEDD TYSELVDAPT
PPRALKSWDT GGNVIHCASL HKILAPGLRL GWITAGRWHA RVEMLKYAQT RNNEGLSQSG
AGLFMATGAY DRHLRHLRSC LKTQREQTAD AIAGYFPAGT RINLPPGGLQ LWVELPERLS
SSRVFDAALA ERIVVAPGTL FSNSSRFDHY LRINCGWPYG EAVDTGLRRL GQIIETLMGR
GDAGAAAAPL PMRPASPPVP IQSPQGRQLQ SSSARAA