| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0959 |
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| Symbol | |
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| ID | 7970134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1055592 |
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| End bp | 1057292 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791555 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002942876 |
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| Protein GI | 239813966 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTTCTT CCCCATGGTC GCGCGGCGAA CCCGCCACCG ACTGGAGCAC GCTCGAGCCG
GGCCCCGGCG AAAGCGCCGC GCTGCTGCGG CTGTGGCGCG GCTTCATGGC GGCGCGCTGC
TTCGTTGCGC TGGTGCTCGT GCTGCTGCAG GGCGTGGCCA TGGCGCTCGG CCAGACGGTG
CAGCCGCTGG CCGTGGCGCT TTCGGCCGGC TACCTGGCTG CCACCTGGCT GGGCGCCCGC
TACGCGCATT TCACGCCGCC GATCCGCGCC TTCGGCATGC TGTGGTTCCT CACCATCGGC
ATCGACCTGG GCACCTTCAC CGCGCTGCAG GTGCTCCAGG GCGGCAGCAT CAACTACACG
CCGCTGTTCG CGCTGCCGGT GCTCATGAGC GCGGTGCTGG GCACGGTGAC CGTGGGCCTG
GGCACCACGG CCACGGTCAC GCTGCTGCTG CTCGCCGATG CCGGCTGGCA CTGGCTGCTG
CAGCAGCCCG GCGATTCCTC CACCCGCTTC GTGCAGGCGG CGCTCACCGG CACCGGGCTC
TTCGTGGTGG CCCTGCTGGC GCACGAGCTG GCGCGCCGGC TGGCCCGCGA GGAAGAAACC
GCGCTGCGCA ACCGAAGCAG CGCGCAGATG CAGGCGCAAG TCAACGACCT GGTGATCGAG
ACGCTGAGCG AAGGCGTGCT GGTGATCGAC GCCGAAGGCA TGGTGCATGC GGCCAATCCG
GCGGCCGACG CGATCCTCGG CCAGGGGCTG GCCCGGCTCG GCCTGCCGTT CGCGCTGCAT
GCGCAGCCCG CCTGGCATGC GCTGGCTGCG CTGGCGCGCC AGACCTTTGC GCGGCGCGCG
CCGCAAAGCG AGGAAATTCC GGTGGCGCAG GCGCGCGGCG CCGCGCGCGA GGTGCGCGTG
CGCACGCGGC TCACGCCCAC CAGCAGCCGG CACGTCGACA GCCTTTGCGT GATGTTCCTG
CAGGACCTGC GCGAACTCGA GGCCCGCATC CGCACCGAGA AGCTGGCCGC GATGGGCCGG
ATGTCGGCCG CGGTGGCGCA CGAGATCCGC AATCCGCTCG CGGCCATCAC GCAGGCCAGC
GCGCTGCTCA ACGAAGACCT CACCGACCCC GCGCACCGCA AGCTGACCAG CATGGTGCAG
CACAACGCGC AGCGGCTCGC ACGCATCGTG GACGACGTGC TCGACGTCTC GCGCGCACGC
CAGCAGCGCG TGCTTTCGCT CGGCGAGCAG GTCGTGCTCG ATCCCGCGGT GCAGGCGCTG
GCCGAAGAGT GGGTGCGCCA GACGCAGCGC CAGGGCGTGC TGATCGCGCT GGACGCCGCC
GACGCCGAGG TGCGCTTCGA TGTCGAGCAC CTGCGCCGCC TGCTCGTGAA CCTGCTGGAC
AACGCAGCGC GCTACGCGAG CAGCCGCGCG GGCGCGATCC AGGTCGTCAC CACCACGCAG
CGCGGCAGCG CCGGCCGCCC CAGCCTGCAG GTGTGGAGCG ACGGCGCGCC GCTGGAGCCG
GCGGTGCAGC GCCACCTGTT CGAGCCTTTT TTCTCATCCG AGAGCCGCTC CAGCGGGCTC
GGCCTCTTCC TGTGCCGCGA GCTGTGCCGG CGCCACGGCG CCACCATCGG CTACGAGCGG
CGCGCGCTGG TGGCGGGGGG GCCCGAGGGC AATGAATTCT TCGTCAGCTT TGCGCCGAGC
GAAAACCGGC TGACACAATA G
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| Protein sequence | MSSSPWSRGE PATDWSTLEP GPGESAALLR LWRGFMAARC FVALVLVLLQ GVAMALGQTV
QPLAVALSAG YLAATWLGAR YAHFTPPIRA FGMLWFLTIG IDLGTFTALQ VLQGGSINYT
PLFALPVLMS AVLGTVTVGL GTTATVTLLL LADAGWHWLL QQPGDSSTRF VQAALTGTGL
FVVALLAHEL ARRLAREEET ALRNRSSAQM QAQVNDLVIE TLSEGVLVID AEGMVHAANP
AADAILGQGL ARLGLPFALH AQPAWHALAA LARQTFARRA PQSEEIPVAQ ARGAAREVRV
RTRLTPTSSR HVDSLCVMFL QDLRELEARI RTEKLAAMGR MSAAVAHEIR NPLAAITQAS
ALLNEDLTDP AHRKLTSMVQ HNAQRLARIV DDVLDVSRAR QQRVLSLGEQ VVLDPAVQAL
AEEWVRQTQR QGVLIALDAA DAEVRFDVEH LRRLLVNLLD NAARYASSRA GAIQVVTTTQ
RGSAGRPSLQ VWSDGAPLEP AVQRHLFEPF FSSESRSSGL GLFLCRELCR RHGATIGYER
RALVAGGPEG NEFFVSFAPS ENRLTQ
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