| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0946 |
|---|
| Symbol | |
|---|
| ID | 7970121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1040147 |
|---|
| End bp | 1041559 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791542 |
|---|
| Product | UDP-N-acetylmuramate |
|---|
| Protein accession | YP_002942863 |
|---|
| Protein GI | 239813953 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
|---|
| TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACATTC ATATTCTTGG CATCTGCGGC ACGTTCATGG GCGGATTGGC CGCCCTGGCA
CGCGAGGCAG GCCACCGGGT CACGGGCTGC GACGCCGGCG TGTACCCGCC CATGAGCGAC
CAGCTCCGGT CGCTCGGCAT CGACCTGATC GAGGGCTTCG GCGCGGACCA GCTCGCGCTT
TCACCCGACG TCTTCGTGGT CGGCAACGTG GTTTCGAGGG CCCGGCTGGC TGACGGCACG
CCCAAGTTTC CGCTGATGGA AGCCATCCTC GACGCCGGCA GGCCCTACAC CAGCGGACCG
CAGTGGCTGG CCGAGCATGT GCTGCAGGGC CGCCATGTTC TGGCCGTGGC CGGCACCCAC
GGCAAGACGA CCACCACCTC GATGCTGGCC TGGGTGCTCG AACAGGGCGG CAAGGCGCCG
GGCTTCCTTG TGGGCGGGGT GCCGCTGGAC TTCGGCGTCT CGGCGCGGCT CGGCAACGGT
TCGGCCTTCG TCATCGAGGC CGACGAGTAC GACACGGCCT TCTTCGACAA GCGCAGCAAG
TTCGTGCACT ACCGCCCGCG CACCGCGGTC CTCAACAACC TGGAGTTCGA CCACGCCGAC
ATCTTCGACG ACCTGGCCGC GATCGAACGC CAGTTCCATC ACCTCGTGCG CACGGTGCCG
GGAACCGGCC GGCTGGTGGT GAACGCCACC GAGGAAAGCC TGCAGCGCGT GCTGGCAGAG
GGCTGCTGGA GCGAACTGGC GCGCTTCGGC GCCGGCGGTC CGAACAGCGG ATGGCAGGCC
CGCGGCACGC ATGACGCCTT CGACGTGCTG CGCCAGGGCG AGGCGGTCGG CCGGGTCGAG
TGGGAGCTCT CGGGCCTGCA CAACCAGATG AACGCGCTGG CCGCCATCGC GGCGGCAGAG
CATGTGGGCG TGGCGCCGGC CGATGCGGCC CGCGCGCTCG GCAGCTTCAG GAGCGTGCGC
CGGCGCATGG AGCTGCGCGG CAGCGTCGAG CGCAGCGGCG GCGCGATCAC CGTCTACGAC
GATTTCGCCC ACCATCCCAC CGCCATCCGC ACCACGCTCG ACGGGCTGCG CAAGAAGCTC
GACGACGCCG GCCGGCAGGG CGAGCGCATC CTCGCGGCCT TCGAGCCGCG CAGCAACACG
ATGAAGCTGG GCGTCATGGC GGCGCAGCTG CCGTGGAGCC TGGAAGCGGC CGACCTGTCG
TTCTGCCACA CGGCCGGCCT CGACTGGGAC GCCGCCGCGG CCCTGGCCCC GATGGGCGAG
CGCGCGCAGG TGGCCGGTGC CATCGAACCG CTGGTGGCGC AGATCGTCGC GGCGGCGCGG
CCCGGCGACC ACATCGTCTG CATGAGCAAC GGCGGCTTCG GCGGCGTGCA CGACAAATTG
CTTGCAGCGC TGCGCGCGGC CAGCGCAGCA TGA
|
|---|
| Protein sequence | MHIHILGICG TFMGGLAALA REAGHRVTGC DAGVYPPMSD QLRSLGIDLI EGFGADQLAL
SPDVFVVGNV VSRARLADGT PKFPLMEAIL DAGRPYTSGP QWLAEHVLQG RHVLAVAGTH
GKTTTTSMLA WVLEQGGKAP GFLVGGVPLD FGVSARLGNG SAFVIEADEY DTAFFDKRSK
FVHYRPRTAV LNNLEFDHAD IFDDLAAIER QFHHLVRTVP GTGRLVVNAT EESLQRVLAE
GCWSELARFG AGGPNSGWQA RGTHDAFDVL RQGEAVGRVE WELSGLHNQM NALAAIAAAE
HVGVAPADAA RALGSFRSVR RRMELRGSVE RSGGAITVYD DFAHHPTAIR TTLDGLRKKL
DDAGRQGERI LAAFEPRSNT MKLGVMAAQL PWSLEAADLS FCHTAGLDWD AAAALAPMGE
RAQVAGAIEP LVAQIVAAAR PGDHIVCMSN GGFGGVHDKL LAALRAASAA
|
|---|
| |