| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0944 |
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| Symbol | |
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| ID | 7970119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1038513 |
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| End bp | 1039631 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791540 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_002942861 |
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| Protein GI | 239813951 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGA ACACTGCCCC CGCCAGCGAC AGCTGGTATG CGAGCGTCGA AAAAACCAGC
AAGACCGACG ACGAACGCAT CAAGGACATC AACGTGCTGC CCCCTCCCGA ACACCTGATC
CGCTTCTTCC CGATCCGCGG CACGCCGGTC GAGACGCTGA TCGAAGGCAC CCGCCGCAGC
ATCCACAACA TCATGGCGGG CAAGGACGAC CGGCTGCTGG TGGTCATGGG CCCGTGCTCG
ATCCACGACC CGGCCGCGGC GCTCGAATAC GCCCGCCGCC TCAAGGTGGA ACGCGAAAAG
TACGCCGGCA CGCTCGAGAT CGTGATGCGC GTGTACTTCG AGAAGCCGCG CACCACGGTC
GGCTGGAAGG GCCTCATCAA CGACCCGTAC CTGGACGAGA GCTACCGCAT CGACGAAGGC
CTGCGCATGG CGCGCCAGCT GCTGATCGAC ATCAACCGGC TCGGCCTGCC GGCGGGCAGC
GAGTTCCTCG ACGTGATCTC GCCGCAGTAC ATCGGCGACC TGATCGCCTG GGGCGCGATC
GGCGCGCGCA CCACCGAAAG CCAGGTGCAC CGCGAACTGG CCTCGGGCCT GTCGGCGCCC
ATCGGCTTCA AGAACGGCAC CGACGGCAAC ATCCGCATCG CCACCGACGC CATCCAGGCG
GCGGCGCGCG GCCACCACTT TCTCTCGGTG CACAAGAACG GCCAGGTCGC GATCGTGCAG
ACCAACGGCA ACCGCGACTG CCACGTGATC CTGCGCGGCG GCAAGGCGCC CAACTACGAC
GCGGCCAGCG TCGAGGCCGC CTGCAAGGAC CTCGAGGCCG CCAAGCTGCC GCCCACGCTG
ATGGTCGACT GCAGCCACGC CAACAGCTCC AAGCAGCACC AGAAGCAGAT CGACGTGGCC
AAGGACATCG CCGGCCAGAT CGCCGGGGGT TCGAACCGCG TCTTCGGCGT GATGGTCGAA
AGCCACCTGC AGGCCGGCGC GCAGAAGTTC ACGCCGGGCA AGGACCAGCT CTCAGGCCTC
GAATACGGCA AGAGCATCAC CGACGCCTGC CTGGGCTGGG ACGACTCGGT GCAGGTGCTG
GACACCCTGT CGCAGGCGAT CAAGCAGCGC CGGGGCTGA
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| Protein sequence | MSTNTAPASD SWYASVEKTS KTDDERIKDI NVLPPPEHLI RFFPIRGTPV ETLIEGTRRS
IHNIMAGKDD RLLVVMGPCS IHDPAAALEY ARRLKVEREK YAGTLEIVMR VYFEKPRTTV
GWKGLINDPY LDESYRIDEG LRMARQLLID INRLGLPAGS EFLDVISPQY IGDLIAWGAI
GARTTESQVH RELASGLSAP IGFKNGTDGN IRIATDAIQA AARGHHFLSV HKNGQVAIVQ
TNGNRDCHVI LRGGKAPNYD AASVEAACKD LEAAKLPPTL MVDCSHANSS KQHQKQIDVA
KDIAGQIAGG SNRVFGVMVE SHLQAGAQKF TPGKDQLSGL EYGKSITDAC LGWDDSVQVL
DTLSQAIKQR RG
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