Gene Vapar_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0942 
Symbol 
ID7970117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1036242 
End bp1037702 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content68% 
IMG OID644791538 
Productpeptidase U62 modulator of DNA gyrase 
Protein accessionYP_002942859 
Protein GI239813949 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.382919 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCTCCC GCGAACCCAC CATCGAGCGC CTCGCCACGG CGCAAAAGCT CCTGCTCACG 
CCCTTCGGCC TGGACGAATC GCACCTGAGC AAGGCCCTGG CCGAGATCAC CGCGCACCGG
GTGGACGACG CCGACCTGTA CTTCCAGTAC ACGCGCAGCG AAGGCTGGAG CCTGGAAGAG
GGCATCGTCA AGACCGGCAG CTTCAGCATC GACCAGGGCG TCGGCGTGCG CGCGGTCAGC
GGCGAGAAGA CGGCCTTTGC CTATTCGGAC GACATCTCCG AGGCTTCGCT GCTCGACGCG
GCCCGCACGG TGCGCTCCAT TTCCTCGGCG GGCCGCACCG GCCGCGTGAA GACGGCCACC
CGCAAGATTG CCTCAAGCCG CTCGCTCTAC AACGGCGTCG ACCCCATTTC CACGCTCGAC
AGCACGGCCA AGGTCAAGCT GCTCGAAAAG GTCGAGAAGC TCGCGCGTTC GCGCGATCCG
CGCGTGGCGC AGGTCATGGC GGGCCTGGCG AGCGAATACG ACGTGGTGCT GGTGGCGCGC
GCCGACGGCA CGCTGGCGGC CGATGTGCGG CCGCTGGTGC GCCTGTCGGT CACCGTGATC
GCCGAGCAGA ACGGCCGGCG CGAGGTCGGC TCGGGCGGCG GCGGCGGGCG CTTCGGCCTG
GCCTACTTCA ACGACACGCA GATCGCCGAA TACGTCGACC AGGCCGTGAA GGCCGCGCTG
ACCAACCTCG ATGCACGCCC GGCGCCTGCT GGCGAGATGA CCGTGGTGCT CGGCTCCGGC
TGGCCCGGCA TCCTGCTGCA CGAAGCCATC GGCCACGGCC TGGAAGGCGA CTTCAACCGC
AAGGGCTCGA GCGCGTTCTC GGGCCGCATC GGCCAGCGCG TGGCGGCCAA GGGCGTGACG
GTGCTCGACG ACGGCACCAT TGCCGACCGC CGCGGCTCGC TGAACGTCGA CGACGAAGGC
AACGCGAGCC AGCGCAACGT GCTCATCGAG GACGGCATCC TCAAGGGCTA CATCCAGGAT
TCGCTCAACG CGCGCCTCAT GAAGGTCAAG CCCACGGGCA ACGGCCGCCG CGAGAGCTAC
GCCCACGTGC CGATGCCGCG CATGACCAAC ACCTACATGC TCGGCGGCGA CAAGGACCCG
AAGGAAATCG TGGCCAGCAT CAAGAAGGGC CTGTACGCCA CCAACTTCGG CGGCGGGCAG
GTCGACATCA CGAGCGGCAA GTTCGTGTTC TCGGCCAGCG AGGCCTTCTG GGTCGAGAAC
GGCAAGATCC AGTACCCGGT CAAGGGCGCG ACCATCGTGG GCAACGGCCC CGACGCGCTC
ACCCGCGTGA CCATGATCGG CAACGACATG AAGCTCGATT CGGGCGTGGG CACCTGCGGC
AAGGAAGGCC AGAGCGTGCC GGTCGGCGTC GGCCAGCCCA CCCTGCGCAT CGATGGTTTG
ACCGTAGGCG GAACGGCCTG A
 
Protein sequence
MISREPTIER LATAQKLLLT PFGLDESHLS KALAEITAHR VDDADLYFQY TRSEGWSLEE 
GIVKTGSFSI DQGVGVRAVS GEKTAFAYSD DISEASLLDA ARTVRSISSA GRTGRVKTAT
RKIASSRSLY NGVDPISTLD STAKVKLLEK VEKLARSRDP RVAQVMAGLA SEYDVVLVAR
ADGTLAADVR PLVRLSVTVI AEQNGRREVG SGGGGGRFGL AYFNDTQIAE YVDQAVKAAL
TNLDARPAPA GEMTVVLGSG WPGILLHEAI GHGLEGDFNR KGSSAFSGRI GQRVAAKGVT
VLDDGTIADR RGSLNVDDEG NASQRNVLIE DGILKGYIQD SLNARLMKVK PTGNGRRESY
AHVPMPRMTN TYMLGGDKDP KEIVASIKKG LYATNFGGGQ VDITSGKFVF SASEAFWVEN
GKIQYPVKGA TIVGNGPDAL TRVTMIGNDM KLDSGVGTCG KEGQSVPVGV GQPTLRIDGL
TVGGTA