Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0942 |
Symbol | |
ID | 7970117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 1036242 |
End bp | 1037702 |
Gene Length | 1461 bp |
Protein Length | 486 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644791538 |
Product | peptidase U62 modulator of DNA gyrase |
Protein accession | YP_002942859 |
Protein GI | 239813949 |
COG category | [R] General function prediction only |
COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.382919 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTCCC GCGAACCCAC CATCGAGCGC CTCGCCACGG CGCAAAAGCT CCTGCTCACG CCCTTCGGCC TGGACGAATC GCACCTGAGC AAGGCCCTGG CCGAGATCAC CGCGCACCGG GTGGACGACG CCGACCTGTA CTTCCAGTAC ACGCGCAGCG AAGGCTGGAG CCTGGAAGAG GGCATCGTCA AGACCGGCAG CTTCAGCATC GACCAGGGCG TCGGCGTGCG CGCGGTCAGC GGCGAGAAGA CGGCCTTTGC CTATTCGGAC GACATCTCCG AGGCTTCGCT GCTCGACGCG GCCCGCACGG TGCGCTCCAT TTCCTCGGCG GGCCGCACCG GCCGCGTGAA GACGGCCACC CGCAAGATTG CCTCAAGCCG CTCGCTCTAC AACGGCGTCG ACCCCATTTC CACGCTCGAC AGCACGGCCA AGGTCAAGCT GCTCGAAAAG GTCGAGAAGC TCGCGCGTTC GCGCGATCCG CGCGTGGCGC AGGTCATGGC GGGCCTGGCG AGCGAATACG ACGTGGTGCT GGTGGCGCGC GCCGACGGCA CGCTGGCGGC CGATGTGCGG CCGCTGGTGC GCCTGTCGGT CACCGTGATC GCCGAGCAGA ACGGCCGGCG CGAGGTCGGC TCGGGCGGCG GCGGCGGGCG CTTCGGCCTG GCCTACTTCA ACGACACGCA GATCGCCGAA TACGTCGACC AGGCCGTGAA GGCCGCGCTG ACCAACCTCG ATGCACGCCC GGCGCCTGCT GGCGAGATGA CCGTGGTGCT CGGCTCCGGC TGGCCCGGCA TCCTGCTGCA CGAAGCCATC GGCCACGGCC TGGAAGGCGA CTTCAACCGC AAGGGCTCGA GCGCGTTCTC GGGCCGCATC GGCCAGCGCG TGGCGGCCAA GGGCGTGACG GTGCTCGACG ACGGCACCAT TGCCGACCGC CGCGGCTCGC TGAACGTCGA CGACGAAGGC AACGCGAGCC AGCGCAACGT GCTCATCGAG GACGGCATCC TCAAGGGCTA CATCCAGGAT TCGCTCAACG CGCGCCTCAT GAAGGTCAAG CCCACGGGCA ACGGCCGCCG CGAGAGCTAC GCCCACGTGC CGATGCCGCG CATGACCAAC ACCTACATGC TCGGCGGCGA CAAGGACCCG AAGGAAATCG TGGCCAGCAT CAAGAAGGGC CTGTACGCCA CCAACTTCGG CGGCGGGCAG GTCGACATCA CGAGCGGCAA GTTCGTGTTC TCGGCCAGCG AGGCCTTCTG GGTCGAGAAC GGCAAGATCC AGTACCCGGT CAAGGGCGCG ACCATCGTGG GCAACGGCCC CGACGCGCTC ACCCGCGTGA CCATGATCGG CAACGACATG AAGCTCGATT CGGGCGTGGG CACCTGCGGC AAGGAAGGCC AGAGCGTGCC GGTCGGCGTC GGCCAGCCCA CCCTGCGCAT CGATGGTTTG ACCGTAGGCG GAACGGCCTG A
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Protein sequence | MISREPTIER LATAQKLLLT PFGLDESHLS KALAEITAHR VDDADLYFQY TRSEGWSLEE GIVKTGSFSI DQGVGVRAVS GEKTAFAYSD DISEASLLDA ARTVRSISSA GRTGRVKTAT RKIASSRSLY NGVDPISTLD STAKVKLLEK VEKLARSRDP RVAQVMAGLA SEYDVVLVAR ADGTLAADVR PLVRLSVTVI AEQNGRREVG SGGGGGRFGL AYFNDTQIAE YVDQAVKAAL TNLDARPAPA GEMTVVLGSG WPGILLHEAI GHGLEGDFNR KGSSAFSGRI GQRVAAKGVT VLDDGTIADR RGSLNVDDEG NASQRNVLIE DGILKGYIQD SLNARLMKVK PTGNGRRESY AHVPMPRMTN TYMLGGDKDP KEIVASIKKG LYATNFGGGQ VDITSGKFVF SASEAFWVEN GKIQYPVKGA TIVGNGPDAL TRVTMIGNDM KLDSGVGTCG KEGQSVPVGV GQPTLRIDGL TVGGTA
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