| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0925 |
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| Symbol | lpxC |
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| ID | 7970100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1019732 |
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| End bp | 1020655 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791521 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_002942842 |
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| Protein GI | 239813932 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.150432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGCAAC AACGAACCCT CAAGTCGATC AGCCGCGCCG TGGGCGTGGG GCTTCATAGC
GGCCAGCGCG TGGAACTGAC GCTGCGCCCC GCGCCGGTGG ACACCGGCAT CGTGTTCAGG
CGCGTCGACC TGCCCGAGCC GGTCGACATC CGCATGACCG CCGAAGCGGT GACCGACACG
CGCCTGGCCT CCACCGTCTC GACCGGCGGC GCCAAGGTGC AGACGGTCGA GCACCTGATG
TCGGCCTGCG CGGGCCTGGG CATCGACAAC CTCTACATCG ACATCACGGC CGACGAAGTG
CCGATCCTCG ACGGGTCGGC CTCGTCCTTC GTGTTCCTGC TGCAAAGCGC GGGCATCGAG
CTGCAGAAGG CGCCGCGCCG CTTCATCCGC GTGACGCGCA AGGTCGAGGT GCGCGAGGGC
GAGGGCGCCA ACGAGAAGTG GGCGAGCCTG GAGCCCTACC ACGGCTACAA GCTGAGCTTC
GAGATCGACT TCGACCACCG CGTGGTCAAT TCCACCGGCC AGCGCGTGGA GTTCGACCTC
GGCACCGATT CCTACAGCCG CGACATCGCA CGCGCGCGCA CCTTCGGCTT CACCAAGGAA
GTCGAATACA TGCGCAGCAA GGGCCTCGCG CTCGGCGGCG GCCTGGACAA CGCCATCGTG
ATGGACGACA CCAAGGTGCT CAATGCCGGG GGCCTGCGCT ACGACGACGA GTTCGTGAAG
CACAAGATCC TCGACGCCAT GGGCGACCTG TACATCATCG GCAAGCCGCT GCTCGCAGCC
TACACCGCAT TCCGCTCGGG CCACGCGCTC AACAACAAGC TGCTGCGCGA ACTGCTGGCC
CACAGCGATG CCTACGAGGT CGTCACCTTC GAAGACGAAA AGCGCGCACC GCGCGGCTTC
GGCGAAGTGG CGCGGGCCTG GTAG
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| Protein sequence | MLQQRTLKSI SRAVGVGLHS GQRVELTLRP APVDTGIVFR RVDLPEPVDI RMTAEAVTDT
RLASTVSTGG AKVQTVEHLM SACAGLGIDN LYIDITADEV PILDGSASSF VFLLQSAGIE
LQKAPRRFIR VTRKVEVREG EGANEKWASL EPYHGYKLSF EIDFDHRVVN STGQRVEFDL
GTDSYSRDIA RARTFGFTKE VEYMRSKGLA LGGGLDNAIV MDDTKVLNAG GLRYDDEFVK
HKILDAMGDL YIIGKPLLAA YTAFRSGHAL NNKLLRELLA HSDAYEVVTF EDEKRAPRGF
GEVARAW
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