| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0917 |
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| Symbol | |
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| ID | 7970092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1009192 |
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| End bp | 1011315 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791513 |
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| Product | UDP-N-acetylmuramoylalanine/D-glutamate ligase |
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| Protein accession | YP_002942834 |
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| Protein GI | 239813924 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0599198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGCACC TGAAAGACCT CCCCGTATTG ATCCTCGGCC TCGGTGCGTC CGGGCTGGCG
ATGGCGCGCT GGTGCGCGCG CCACGGCGCG GTCGTCACGG TGGCCGACAC GCGCGAGGCG
CCGGCGCTGC TTGCGACGCT GCGGGCGGAA TGGCCCGAGG TGGCGTTCAT CGGCGGGCCG
TTCTCGGCCG CGCTGGTCGA AGGCACGCCG ATCCGCGCGG TGTACCGCTC GCCGGGCCTG
TCGCCCGCCA CCATCGCACC GGTCGTCGAT GCGGCGCGGG CCGTGGGGCT CGCGGTCGGC
GGCGAACTGG ATCTGTTTGC GCGCGCGCTG CTGGACCTGC GGACCGTCGA GGTGCCGGTG
GCCGAGGCGG CGCCTGAAGT GCCGGAAGAC GAGCCTGCGG TGGAGGTGCC GGCGGAGCCC
GTCGCGGAAC CCGATGCGCA AGGCGAATTG CCGCTCGCTG GTGAGCCGGC GGAAGCTGCG
GACGCCGCGG CACCGGAAGA GCCGGCAACG CCCGAGATGC CGCAAGCGGC CGAGCCCGTG
GCCGATGCCG CTGCCGATGC GGCAGAAGCC GAGCCCGCAC CGCCCGCCGC GCAGGCCGAA
GCCATGCCGC GCGACCCGTC GCTGAGCGTT CCCGCCGCGC CGCCGCCAGG CGACGAGCAA
CAGCCAGCGC AGGAGCAGGC GCCGGCAGCC GAGACGCAGG ACGCCGCCGA ACCGGCACCC
GCGCCCGCGT CCGCGCCTGC CACCGTGTCT CGCTTGCCGA CCCCCGGCCA GCCCTACGTC
CCCACGGCCG CCAGGGAGGC CGCCGAGTTC GTCGCCAAGA TCGCCGAACT CTCCGCCACC
AACCCGGCCT CCGCCGCAGT CGAGGAAGAA GACACGCCGC AGCTCAAGCT CGTGCCGATC
GAGGAGCCGC CGGCGCCCAG GGGCTACACG CCCGCGGTGC TCGCCGTCAC CGGCACCAAC
GGCAAGACTA CCGTCACCGC GCTCACCGGC CAGCTGGTCG AGCGCGCGGG CAAGAGCGTG
GCCGTGGCCG GCAACATCGG CCCGACGCTG CTCGACACCC TGGCCGCACA CATCGATGCC
GAGACGCTGC CCGATGTCTG GGTGCTCGAG CTCTCGAGCT TCCAGCTCGA CGGCGTGCAG
GGCTTCGAGC CGACTGCCGC CACCGTGCTC AACCTCACGC AGGACCATCT CGACTGGCAT
GGGGACATGC AGGCGTATGC ATCGGCCAAG GCGCGCATCT TCGGCACGCA GGGCCTCATG
GTGCTCAACC GCGACGACCC TGGCGTGATG GCCATGCTGC CCGCGCCCGT CAAGGTGAAG
CTGCAGCGCC CGCAGGTCCG CGCCCATGTC ACCTTCGGCG CGTCGATGCC GCTGCGTCCG
GGCGACTACG GCATCGAGCG CGTCAACGGC ATGGCCTGGC TGGTGCGCGC ACTCGAGGCC
GACGAAACGC AGAAGCGCAA GCGCGGCGCA GTGGTCGAGG AAGAAATCTT CCTGCAGCGC
CTGCTGCCCG CCGACGTGCT GCGCATCCGC GGCCGCCACA ACGCGATGAA CGCGCTGGCG
GCGCTCGCGC TGGCCAGCGC CGCCGGCTGC CCGCTCGGGC CGATGCTCTA CGGCCTGCGC
GAATACCGCG GCGAGCCGCA CCGCGTGGAG CCAATCGCCA TCGTCGATGA GGTCGAGTAC
TTCGACGACA GCAAGGGCAC CAACGTCGGC GCAACGGTCG CCGCGCTCAA CGGCCTGGGC
GAAGACCGCC GCGTGGTTGT GATCCTCGGC GGCGAGGGCA AGGGCCAGGA CTTCGAACCG
CTGGCCGCGC CCGTCGCGCA GTACGCGCGC GCCGTGGTGC TGATCGGCCG CGATGCGCCG
CTGATCGAGC AGGCGCTGGC CGCCACCGGC GCCTCGCTGA TGCATGCGGG CTCGATGCAG
GAGGCCGTCA AGCTGGCCGC CGCGCGCGCC AACCCCGGCG ATGCCGTGCT GCTGTCGCCG
GCCTGTGCGA GCTTCGACAT GTTCAAGGAC TACGAGCACC GCGCGGCCGT GTTCCGCGAG
GCCGTGCAGG CGCTCGAGGA CGAGCCTCGC ATGGCCGGCC CGTCGTCGAA CGATGCCGAT
TTTTCTTCGG GAGGTCCGGC TTGA
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| Protein sequence | MRHLKDLPVL ILGLGASGLA MARWCARHGA VVTVADTREA PALLATLRAE WPEVAFIGGP
FSAALVEGTP IRAVYRSPGL SPATIAPVVD AARAVGLAVG GELDLFARAL LDLRTVEVPV
AEAAPEVPED EPAVEVPAEP VAEPDAQGEL PLAGEPAEAA DAAAPEEPAT PEMPQAAEPV
ADAAADAAEA EPAPPAAQAE AMPRDPSLSV PAAPPPGDEQ QPAQEQAPAA ETQDAAEPAP
APASAPATVS RLPTPGQPYV PTAAREAAEF VAKIAELSAT NPASAAVEEE DTPQLKLVPI
EEPPAPRGYT PAVLAVTGTN GKTTVTALTG QLVERAGKSV AVAGNIGPTL LDTLAAHIDA
ETLPDVWVLE LSSFQLDGVQ GFEPTAATVL NLTQDHLDWH GDMQAYASAK ARIFGTQGLM
VLNRDDPGVM AMLPAPVKVK LQRPQVRAHV TFGASMPLRP GDYGIERVNG MAWLVRALEA
DETQKRKRGA VVEEEIFLQR LLPADVLRIR GRHNAMNALA ALALASAAGC PLGPMLYGLR
EYRGEPHRVE PIAIVDEVEY FDDSKGTNVG ATVAALNGLG EDRRVVVILG GEGKGQDFEP
LAAPVAQYAR AVVLIGRDAP LIEQALAATG ASLMHAGSMQ EAVKLAAARA NPGDAVLLSP
ACASFDMFKD YEHRAAVFRE AVQALEDEPR MAGPSSNDAD FSSGGPA
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