| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0915 |
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| Symbol | |
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| ID | 7970090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1006569 |
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| End bp | 1007984 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791511 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
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| Protein accession | YP_002942832 |
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| Protein GI | 239813922 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.138182 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTTCA CGCTGGCCCA GGCGCAGCAA TGGATTCCGG GCGCGCGCCT GGTGGGCGAC
GGCGCAACGG CCATTGCCCG CGTCCATACC GACACCCGCA CGCTCGCGGA AGGCGACCTG
TTCGTGGCGC TCAAGGGCGA ACGCTTCGAC GCCAATGAAT TCCTGGCCGA TGCCAAGGCG
CGCGGCGCCG TCGCCGCCAT TGCGCACGGC GGCCTCGAGG CGGCCGGCCT GGCAGGGCTC
GAGGTGCCCG ATTCGCTGGC CGCGCTCGGC GCGCTCGGCG CCGGCTGGCG CGCGCAGTTC
GATCTGCCGC TGATCGCCGT GACCGGCAGC AACGGCAAGA CGACCGTCAC GCAGATGATC
GCGGCCGTGC TGGTCGCCTT CAGGGGCGAT CGCGCGCTCG CGACGGCCGG CAACTTCAAC
AACGAGATCG GCGTTCCGCT GACCTTGCTG CGCCTGCGCG CGAAGCACCA GCATGCGGTG
GTCGAGCTGG GCATGAACCA TCCGGGCGAG ATCGCGCGGC TCGCGGCCAT CGCGCGTCCG
ACCGTCGCGC TGGTCAACAA CGCGCAGCGC GAGCACCTGG AGTTCATGGC CACCGTGGAA
GCGGTGGCGC TCGAGAACGG CGCGGTGTTT TCCTTCGTGC CGGAGGACGG CACCGCGGTG
TTCCCGCACG GCGACGAATT CGCTCCTCTG TGGAACGACA TGGCGCACGA CGGCGCCACG
CGCCGCTGCA TGACCTTCGG CGAGCATGAA GACGCCGACA TCTCGCTGGT GGCGGCCGAA
TGGCAGCAGG GCGCATGGCA GGTCCGCATC CGCACGCCGC TGGGCGACTT CGATGCGCAG
TTGCACATCG CGGGCCGGCA CAACGTCGTC AATGCGCTGG CGGCCACCGC GTGCGCGCTC
GCTACCGGCA TTCCGCCCGA GACCATTGCG CGCGGCCTCT CGGCCTTCGA ACCGGTGAAG
GGCCGCTCCA AGGCGAGCGC GGTGCTGCTG CCCGGCGGCC ATTCGCTCAC GCTGGTGGAC
GACAGCTACA ACGCCAATCC CGATTCCGTG CGCGCGGCCA TCGACGTGCT CGCGGCCTTG
CCCGGCCCGC GCCTCCTGGT GCTCGGCGAC ATGGGCGAGG TCGGCAACCG CGCGCCCGAG
TTCCATGCCG AGGTCGGCGA CTGGGCGCGC CAGCGCGGCA TCGAGGCCGT GTATGCGCTC
GGCGCCGAAA CCGCGCACAG CATCGCGGCC TTCGACGGCG GCGACAACGG CCGCCATTTC
GCGGACATCG AGGCGCTCGG CGCCGCGGTG CTGGCGCGGC TGCCCCAGGT GGGGAGCGTG
CTCGTCAAGG GCTCGCGCTT CATGAAGATG GAGCGCGTGG TGCAGGCGAT CGAGCAATCA
CGACAACAAC AAAAGGAGGC CGGTCATGAC GCATGA
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| Protein sequence | MMFTLAQAQQ WIPGARLVGD GATAIARVHT DTRTLAEGDL FVALKGERFD ANEFLADAKA
RGAVAAIAHG GLEAAGLAGL EVPDSLAALG ALGAGWRAQF DLPLIAVTGS NGKTTVTQMI
AAVLVAFRGD RALATAGNFN NEIGVPLTLL RLRAKHQHAV VELGMNHPGE IARLAAIARP
TVALVNNAQR EHLEFMATVE AVALENGAVF SFVPEDGTAV FPHGDEFAPL WNDMAHDGAT
RRCMTFGEHE DADISLVAAE WQQGAWQVRI RTPLGDFDAQ LHIAGRHNVV NALAATACAL
ATGIPPETIA RGLSAFEPVK GRSKASAVLL PGGHSLTLVD DSYNANPDSV RAAIDVLAAL
PGPRLLVLGD MGEVGNRAPE FHAEVGDWAR QRGIEAVYAL GAETAHSIAA FDGGDNGRHF
ADIEALGAAV LARLPQVGSV LVKGSRFMKM ERVVQAIEQS RQQQKEAGHD A
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