Gene Vapar_0908 details

Gene Information

• Locus tag: Vapar_0908
• ID: 7970083
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 999391
• End bp: 999936
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644791504
• Product: ATP-dependent protease peptidase subunit
• Protein accession: YP_002942825
• Protein GI: 239813915
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG5405] ATP-dependent protease HslVU (ClpYQ), peptidase subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACAGT TTCACGGCAC CACCATCGTG AGCGTGCGCC GCAAGACCCC CCAGGGCGAC 
CAAGTCGCCA TTGGCGGGGA CGGGCAGGTC ACTCTCGGCA ACATCGTCAT CAAGGGCACC 
GCGCGCAAGG TGCGGCGGCT CTATCACGGC AAGGTGCTCG CGGGCTTTGC CGGCGCCACG 
GCCGACGCCT TCACGCTCTT CGAGCGCTTC GAGGCCAAGC TCGAAAAGCA CCAGGGGCAC 
CTCACGCGCG CGGCCGTCGA ACTCACCAAG GACTGGCGCA CCGACCGCGT GCTGCGCAAG 
CTCGAGGCCA TGCTGGCTGT GGCCGACGCC ACCACCTCGC TCATCATCAC CGGCAACGGC 
GACGTGCTGG AGCCCGAAGA CGGCGTGATC GCCATCGGCT CGGGCGGCGC CTATGCGCAG 
TCGGCCGCCA AGGCGCTGAT CGACAACACC GAACTCACGG CCGAGCAAAT TGTGCGCAAA 
TCGCTGGCGA TAGCCGGTGA AATCTGCATT TACACGAACA TGAACCACAC GGTGGAAGCG 
CTCTGA 

 

Protein sequence

MEQFHGTTIV SVRRKTPQGD QVAIGGDGQV TLGNIVIKGT ARKVRRLYHG KVLAGFAGAT 
ADAFTLFERF EAKLEKHQGH LTRAAVELTK DWRTDRVLRK LEAMLAVADA TTSLIITGNG 
DVLEPEDGVI AIGSGGAYAQ SAAKALIDNT ELTAEQIVRK SLAIAGEICI YTNMNHTVEA 
L