| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0899 |
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| Symbol | dapF |
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| ID | 7970074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 988979 |
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| End bp | 989863 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791495 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002942816 |
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| Protein GI | 239813906 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCC GCTTTACCAA GATGCAGGGT GCCGGCAACG ATTTCGTCGT GCTGGACGAG
ACGCGCGGCA CGCTGGGCCT CACGGCCGCG CAGTACCGCT TCCTGGCCGA CCGCCATTTC
GGCGTCGGCG CCGACCAGAT CCTCACGGTG CGGCCGCCCT CCAAGGGCGC GGCCGAGGGG
GTCGATTTCC AGTACGTGAT CCACAACGCC GACGGCGGCG AGGTGGAGCA GTGCGGCAAC
GGCGCGCGCT GCTTCATGCG CTTCGTGCGC GAGCACCACC TGACCGACAA GGACACGGTG
CGCGTCGAAA CGCTGGCCGG CATCATCGAG CCGCGCATGG GCGCAGACGG CCGCGTCACG
GTCGACATGG GGCCGCCCAT CTTCGAGCCC GCGCGCGTGC CCTTCGACAC CGCCGGCCTC
GATCCGCAGC CCACGGGGTC GTGGCACACC TGGCACCTGG CCCTCGGCAC GCATGCCGAC
TCGGCCATCG TGTCGGTCGC GGTGCTGTCG ATGGGCAATC CGCATGCGGT GCAGGTGGTC
GACAACGTCG ACACCGCGCC CGTGGCCCGG CAGGGCCCGC TGATCGAGCA CCACCCGCGC
TTTGCGCAGC GCGTGAACGC CGGCTTCATG CAGGTGGTCG ACCGCTCGCA CATCAAGCTG
CGCGTGTTCG AGCGCGGCGC CGGCGAAACG CTGGCCTGCG GCACCGGCGC CTGCGCGGCG
GTGGTGGCGG GCATCCGGCT CGGCCTGCTG GAGCGCCGGG TCGACGTGCA GACGCATGGC
GGCGTGCTCA CGATCGGCTG GGAAGGCGAG GGCCATCCGG TGCTCATGAC CGGCCCGGCC
ACCACGGTTT TCGAGGGAGA CATCGAGGTG CCCGAGCTGC CATGA
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| Protein sequence | MRIRFTKMQG AGNDFVVLDE TRGTLGLTAA QYRFLADRHF GVGADQILTV RPPSKGAAEG
VDFQYVIHNA DGGEVEQCGN GARCFMRFVR EHHLTDKDTV RVETLAGIIE PRMGADGRVT
VDMGPPIFEP ARVPFDTAGL DPQPTGSWHT WHLALGTHAD SAIVSVAVLS MGNPHAVQVV
DNVDTAPVAR QGPLIEHHPR FAQRVNAGFM QVVDRSHIKL RVFERGAGET LACGTGACAA
VVAGIRLGLL ERRVDVQTHG GVLTIGWEGE GHPVLMTGPA TTVFEGDIEV PELP
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